Pogoniulus pusillus (red-fronted tinkerbird): 135192144
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Entry
135192144 CDS
T10504
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03013
Nucleocytoplasmic transport
ppus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135192144 (UPF1)
03015 mRNA surveillance pathway
135192144 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135192144 (UPF1)
Enzymes [BR:
ppus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135192144 (UPF1)
5.6.2.5 RNA 5'-3' helicase
135192144 (UPF1)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135192144 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
135192144 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
135192144
NCBI-ProteinID:
XP_064031120
LinkDB
All DBs
Position
41:2265455..2296506
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacacggaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacacaaactccgcccgggcccgggcaggcagggccgggacaaggccaaggc
ccccccggagcgggacagggaccgccgggaccgatcgaagcgcaggttaatggccccgat
ggcatcctgcagaatggagctgtggatgacaatgtggctaaaaccagccagcttctggct
gagctgaattttgaggaggatgaagaagacacctattacaccaaggatcttcctgtgcat
gcctgcagttactgtggtatccatgaccctgcctgtgtggtttactgcaacaccagcaaa
aagtggttctgcaacgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcaaagtgcaaagaagtgactctccacaaggatggacctctaggagagactgtcctg
gaatgctacaactgcggatgccggaatgtctttctgcttggctttattccagccaaggca
gactctgtggtggttttgctgtgcaggcagccatgtgccagccagagcagtttaaaggat
attaactgggacagttcacaatggcagcctctgatccaggatcgctgcttcctttcctgg
ctggtgaagattccctctgagcaggaacagctgagggcaaggcagatcacggctcagcag
atcaacaaactggaggagctgtggaaggaaaatccatctgcaacccttgaggacttggag
aagcctggtgtggatgaagaaccacagcacgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggcccactggtcaagctggaggcagattatgacaagaaactcaag
gagtctcagacccaagacaacatcacagtcaggtgggacctgggcttgaacaagaagagg
attgcttacttcactctgccaaagactgattcagacatgagactcatgcaaggagatgag
atctgcctgaggtacaaaggagacctggctcctctctggaaaggaattggccatgtcatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gtgggagcccccgtggaggtcacccacaacttccaagtggactttgtgtggaagtctact
tcctttgacaggatgcagagtgctttaaaaacctttgctgtggatgagacctcagtgtct
gggtacatctatcacaagctgctgggtcacgaggtggaagatgtcatcatcaaatgccag
ctgccaaagcgctttacagcacaaggactgcctgatctcaaccactctcaggtgtatgcc
gtgaagactgtgctgcagcgtcccctcagcctcatccaggggcctcctggcactggcaag
acagtgacatcagccaccattgtctatcacctggccagacagggcaatgggcctgtcctg
gtctgcgctcccagtaacatagctgtggatcagctgacggagaagatccatcagaccggc
ctgaaggtggttcggctgtgcgccaagagcagggaggcaatcgactctcctgtgtccttc
ctggcactgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcag
cagctgaaggatgagactggagagctgtcgtctgctgacgagaaacgctaccgtgcgctg
aagagaacagcagagcgagagctgctcatgaacgcagatgtgatctgctgcacgtgcgtg
ggagctggggacccaaggctcgccaagatgcagttccgctccatcctgatcgacgagagc
acccaggccaccgagccagagtgcatggtgccagtcgtgctgggagccaagcagctgatt
ctggtgggtgaccactgccagctgggcccagtggtgatgtgcaagaaggctgccaaggca
gggctgtcgcagtcgctgttcgagcggctggtggtgctgggcatccgccccatccgcctg
caggtgcagtaccgcatgcaccctgcgctcagcgccttcccctccaacatcttctacgag
ggctcgctgcagaacggcgtcaccgcagcagacagagtcaagaagggctttgacttccag
tggccccagccagacaagcctatgttcttctacgtcacccaggggcaggaggaaattgcc
agctcgggcacctcctacctaaacaggactgaggctgccaacgtggagaagatcaccacc
aagctgctgaaggctggtgccaagccagaccaaattggcatcattaccccttacgagggg
cagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaaactctac
caggaagtggaaattgcaagcgtggatgccttccagggccgggagaaggacttcatcatc
ctgtcctgtgtgagggccaacgagcaccaggggattggcttcctgaacgaccccaggagg
ctcaatgtggccctgaccagagcgaggtatggagtcatcatcgttgggaacccaaaggct
ctgtccaagcagcccctctggaaccacctgctgaactactacaaggagcagaaggtgctg
gtggagggacccctcaacaacctgcgggagagcctcatgcagttcagcaagccccggaag
ctggtcaacaccatcaaccctggtgctcgtttcatgaccactgccatgtacgacgcgcgt
gaggcgatcatcccaggctctgtctacgaccgcagcagccaaggccgtccatccaatatg
tacttccaaacccacgaccagatcgggatgatcagcgccggccccagccacgtcactgcc
atgaacattcccatccccttcaacctggtgatgccacccatgccaccacctggctacttc
ggccaggccaacggaccagccgcaggccgtggggcacccaaaggcaagactggacgtggt
gggcgccagaagaatcggtttgggattcctggagcaagccaatcaaaccttccaaacagt
caagcaagccaagatgtggtgtcccagcctttctcccagggtccactgactcaaggttat
atctccatgagtcaaccatcacagatgagccagcctgggctgtcccaaccagaattatcc
caggacagttaccttggtgatgagtttaagtcccagatcgatgtggcactgtcacaggac
tctacttaccagggtgaacgtgcatatcaacacggtggcgtgacgggactgtcacagtat
tag
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integrated database retrieval system
