Pogoniulus pusillus (red-fronted tinkerbird): 135192351
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Entry
135192351 CDS
T10504
Symbol
SNRNP200
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135192351 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppus03041
]
135192351 (SNRNP200)
Enzymes [BR:
ppus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135192351 (SNRNP200)
Spliceosome [BR:
ppus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135192351 (SNRNP200)
Complex C
U5 SnRNP specific factors
135192351 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
135192351
NCBI-ProteinID:
XP_064031497
LinkDB
All DBs
Position
42:4246442..4294622
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIELTQEDVRLVGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDM
LNAETVLGNVQNAKDAVNWLGYTYLYIRMLRSPPLYGISHDDLKGDPLLEQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETVQTYNQLLKPTLSEIELFRVFSL
SSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTIAPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSSFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVL
VFVPSRKQTRLTAINILTTCASDVQRQRFLHCAEKDLVPYLEKLNDNTLKETLVNGVGYL
HEGLTPMERRVVEQLFSSGAVQVMVASRSLCWGMSIAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLSQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERTALLQLSEAQIADVARFCNRYPNIELSYEVVEKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATG
THNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtcaccgcccgcagcctgcagtatgagtacaaggcgaactccaacctcgtg
ctccaagctgaccgctccctgatcgaccgcacccgccgggatgagcccacgggggaggtc
ctctccctggtgggcaaactggaggggactcgcatgggggacaaggcccagaggaccaaa
cctcagatgcaggaggagagaagagccaagaggaggaaacgtgatgaggacaggcatgac
atcaacaagatgaaaggttacaccctgctgtcagagggcatcgatgagatggttggcatc
atctacaaacccaagaccaaagagaccagggagacctatgaggtgttgctgagcttcatc
caggcagctcttggggaccagccccgggacatcctgtgtggggctgctgatgaggtgctg
gctgtgctgaagaacgagaagctgagggacaaggagaggaggaaggaaattgacctgctg
ctgggccagactgatgacactcgctaccatgtgctggtcaacctgggcaagaagatcaca
gactacggtggagacaaagagatccagaacatggatgacaacatcgatgagacctatggt
gtgaatgtgcagtttgagtctgatgaggaggagggggatgaggacatctacggcgaggtg
cgggacgaggcctccgacgatgacatggagggggacgaagctgtggtgcgctgcaccctc
tcagccaacctggtggcttcaggggagctgatgagttccaagaagaaggatctgcaccct
cgagacatcgacgccttctggctgcagaggcagctcagccgcttctacgacgatgccatc
gtgtcccagaagaaggcagatgaggtgctggagatcttgaagacagccagtgatgaccgt
gagtgtgagaaccaactggtgctgctgctgggcttcaacacctttgacttcatcaaggtc
ctgcgccagcaccgcatgatgatcctctactgcaccttgctggccagtgctcagagtgag
gctgagaaggagaggatcatggggaagatggaagcagatcctgagctctccaagttcctg
taccagctgcatgagacagagaaggaagatctcatccgggaggagcgttcccgccgggag
cgtgtccgccagtcccgcatggacactgacctggagaccatggacctggaccagggagga
gaggctctggctcccaggcaggtgctggacttggaggatctggtgtttgcccaaggtagc
cacttcatggccaacaagagatgccagctgcccgacggctccttccgcaggcagcgcaag
ggctacgaggaggtccatgtgcccgccctgaagccaaagccctttggctctgaggagcaa
ctggtccctgtggagaagctgcccaagtatgcccaggctggcttcgagggcttcaaaacc
ctgaaccgcatccagagcaaactctaccgcgcggcactggagtcggatgagaacctcctg
ctctgtgcccccacgggagctggcaagaccaacgtggccctcatgtgcatgctgcgggag
atagggaagcacatcaacatggatggcaccatcaacgtggacgacttcaagatcatctac
attgcccccatgaggtccttggtgcaggagatggttggcagctttggcaagcgcttggcc
acctatggcatcaccgtggccgagctgacaggggaccaccagctgtgcaaggaggagatc
agtgccacccagatcatcgtctgcaccccggagaagtgggacatcatcacccgcaagggg
ggggagcgaacctacacccagctggtgcggttggtgatcctggacgagatccacctgctg
cacgacgaccgcggccccgtgctggagtcgctggtggccagagccatccgcaacatcgag
ctgacgcaggaggacgtgcggctggtggggctcagtgccaccctgcccaactacgaggac
gtggccaccttcctgagggtggacccagccaaaggcttgttctacttcgataacagcttc
aggcctgtgcctctggagcagacctatgtgggcatcactgagaagaaggcaatcaaacgt
ttccagatcatgaatgagattgtctatgagaagatcatggagcatgctggcaagaaccag
gtgctggtgtttgttcactccaggaaggagactggcaagactgccagggccatcagggac
atgtgtctggagaaggacaccttgggcctcttcctcagggagggctcagcctccacagag
gtcctgaggacagaagcagaacagtgcaagaacctggagctgaaggatctcctgccctat
ggcttcgccatccaccacgcgggcatgactcgagtggacaggaccctggtggaggatctg
tttgctgacaaacacatccaggtgctggtttccacagccaccctggcctggggggtgaac
ctccctgcccacactgtcatcatcaaggggacacaggtttacagcccagagaagggacgt
tggactgagctgggagctttggacatcctccagatgctgggacgtgctgggaggcctcaa
tatgacaccaagggggaagggatcctcatcacctcccatggggagctgcagtattacctc
tccctcctcaaccagcagctgcccattgagagccagatggtagccaagctcccagacatg
ctcaatgctgaaactgtgctgggcaacgttcagaatgccaaggatgcagtcaactggctg
ggctacacctacctgtacatccgcatgctgcgctccccccccctctacggcatctcccac
gacgacctcaagggggaccccctgctggagcagcgccgcctcgacctggtgcacacagca
gccctcatgctggacaagaacaacctggtcaagtacgacaagaaaacaggcaacttccag
gtgacagagctgggtcgcattgccagccactactacatcaccaacgagacagtgcagacc
tacaaccagctcctgaagcccactctgagtgaaattgaactcttcagggtcttctccctg
tcctcagagttcaggaacatcactgtgagagaggaggagaagttggagcttcagaagctg
ctggaacgtgtccccatcccagtcaaggagagcattgaggagcccagtgccaagatcaat
gtgctcctgcaagccttcatctcccagctgaagctggaagggtttgctctcatggcagac
atggtctatgtcacccagtctgccgggaggctgatgagagccatcttcgagatcgtcctg
aaccggggctgggcccagctcacagacaagaccttgaacctctgcaagatgattgacaaa
aggatgtggcagtccatgtgccctctgcgccagttcaagaagctgcctgaggaggtggtg
aagaagattgagaagaagaatttccccttcgagcgtctctacgacctgaaccacaacgag
attggggagctgatcaggatgcccaagatgggcaaaaccatccacaagtatgttcacctc
ttccccaagctggagctgtctgtgcacctgcagcccatcacccgctccaccctcaaagtg
gagctcaccatcgccccggacttccagtgggatgagaaggtgcatggctcctcagaagct
ttctggatcctggtggaagatgtggacagtgaggtgatcctgcaccacgagtacttcctg
ctgaaggccaagtatgcccaggatgagcacttggtcaccttcttcgtgccagtcttcgag
cccctgcccccccagtacttcatccgcgtcgtgtccgaccgctggctctcctgtgagacc
caactgcctgtgtccttccgccacctgatcctgcctgagaagtatcctccccccaccgag
ctgctggacctgcagcccctgcctgtgtctgcgctgcgcaacagctccttcgagagcctc
taccaggacaagttccccttcttcaaccccatccagactcaagtgttcaacactgtctac
aacagcgatgacaacgtctttgtgggtgcccccacgggcagtggcaagaccatttgtgct
gaatttgccatcctgaggatgctgctgcagaactctgagggtcgttgtgtctacatcacc
cccatggaggccttggctgagcaggtcttcatggactggtatgagaagttccaggaacgc
ctcaataagaaggttgtgctgctgactggggagaccagcactgacctgaagctgctgggc
aaaggcaacatcatcatcagcaccccagagaagtgggacatcctctcccgccgctggaag
cagcgcaagaacgtccagaacgtcaacctcttcatcgtggatgaagtgcacctcatcggg
ggggagaatgggccggtgctggaggtgatctgctcccgcatgcgctacatctcctcgcag
atcgagcgacccatccgcatcgtggccctcagctcctccctgtccaatgccaaggatgtg
gcacactggctgggctgcagtgccacctccaccttcaacttccaccccaacgtccgccct
gtgcccctggagcttcacattcagggcttcaacatcagccacacgcagacgcggctgctg
tccatggccaagcccgtgtaccatgccatcatgaagcactcccccaagaagcctgtgctg
gtctttgtgccctcccgcaagcagactcggctcacagccatcaacatcctcaccacctgc
gcctccgacgtccagcggcagaggttcctgcactgtgcagagaaggatctggtgccatac
ctggagaagctgaatgacaacaccctgaaggagacgctggtgaatggggttgggtaccta
cacgagggcctgacccctatggagcgccgtgtggtggagcagctcttcagctctggtgca
gtgcaggtgatggttgcctcccggagcctctgctggggcatgagcatcgctgcccacctg
gtgatcatcatggacacacagtactacaacggcaagatccacgcctacgtggactacccc
atctatgatgtgctgcagatggttggccatgccaaccgcccgctgcaggacgacgaggga
cgctgtgtcatcatgtgccagggctccaagaaggacttcttcaagaagttcctctatgag
cccctgccagtggagtctcacctggaccactgcatgcacgaccacttcaacgctgagatt
gtcaccaagaccatcgagaacaagcaggatgctgtggactacctcacctggaccttcctc
taccgcaggatgactcagaaccccaactactacaacctgcaaggtgtgtcccaccggcac
ctctcggatcacctctccgagctggtggagcagaccctcagtgacctggagcagtccaag
tgcatcagcattgaggatgagatggatgtggctcctctcaacctgggcatgatagctgcc
tactactacatcaactacaccaccatagagctcttcagcatgtccctcaacgccaagacc
aaggtgagaggcctgattgagatcatctccaacgctgctgagtacgagaacatccccatc
aggcaccacgaggacaacctcctgcggcagctgtcccagaaagtccctcacaagctgacc
aaccccaaattcaacgatccccacgtcaagaccaacctcctgctgcaggctcacctgtcc
cgcatgcagctgagcgctgagctgcagtcagacacggaggagatcctcagcaaggccatc
aggctgatccaggcctgtgtggatgtcctgtccagcaatgggtggctcagcccagctctg
gctgccatggagctggcccagatggtgacccaggccatgtggtccaaggactcctacctc
aagcagctgcctcacttcacctcggagcacatcaagcgctgcactgacaagggtgtggag
agtgtgttcgacatcatggagatggaggacgaggagaggactgccctgctgcagctgtcg
gaggcgcagatcgcggacgtggctcgcttctgcaaccgctaccccaacatcgagctgtcc
tacgaggtggtggagaaggacagcatcaggagcggtggccccgtggtggtgttggtgcag
ctggagcgggaggaggaggtcaccggtcctgtcatcgctcctctcttcccccagaaacgt
gaggagggttggtgggtggtgattggagactccaagtccaacagcctcatctccatcaag
cgtttgacgctgcagcagaaggctaaggtgaagctggatttcgtggccccagccacgggg
actcacaactacactttgtacttcatgagcgatgcctacatgggctgcgaccaggagtac
aagttcagcgtggacgtgaaggaggcagagagtgacagcgactctgactga
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integrated database retrieval system
