KEGG   Pseudomonas putida H8234: L483_00485
Entry
L483_00485        CDS       T02706                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pput  Pseudomonas putida H8234
Pathway
pput02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pput00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    L483_00485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pput03021]
    L483_00485
Transcription machinery [BR:pput03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     L483_00485
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF PhyR_sigma-like HTH_23 Sigma70_r4 GerE HTH_11 HTH_29 HTH_Tnp_ISL3 HTH_40 HTH_24 MPAB_Lcp_cat HTH_28 HTH_7 HTH_36 HTH_10 TetR_C_31
Other DBs
NCBI-ProteinID: AGN77266
LinkDB
Position
complement(97963..98466)
AA seq 167 aa
MPSNDSVQTLYSDHHGWLHAWLRSKLGNAADAADLAHDTFVRLLQRREHLQLNTPRAFLR
TVARGLIIDHWRREELHRAYLEALAHVPEAQSPSAETRELLLELLERIARMLDGLKPKVR
RAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALYHCYVLRYEDEC
NT seq 504 nt   +upstreamnt  +downstreamnt
atgcccagcaatgactccgtgcaaacgctctacagtgaccaccacggttggttacacgcc
tggctacgcagcaagctgggcaatgccgccgatgccgcagacctggcccatgacaccttc
gtccgcttgctgcaacgccgcgaacacctgcagctaaacacccctagggccttcttgcgc
acggtagcccgtgggctgatcatcgatcactggcgccgcgaggagctgcaccgggcctac
ctggaggcattggcccatgtgccggaagcacagtctccatcagccgaaacccgcgagctg
ctgctggagttgcttgaacgtattgcgcgcatgctcgacggcctcaaacccaaggtacgt
cgcgccttcctcctggcccaatgcgaggggctgaagcatcaggccattgccgagcagatg
gggatctcagtgcgtacggtggagcgttacatcgctgatgcgctctaccattgctatgtg
ctgcgctatgaagacgagtgttga

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