KEGG   Pseudomonas putida H8234: L483_01800
Entry
L483_01800        CDS       T02706                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pput  Pseudomonas putida H8234
Pathway
pput02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pput00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    L483_01800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pput03021]
    L483_01800
Transcription machinery [BR:pput03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     L483_01800
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Rv2175c_wHTH MerR HTH_24 Sigma70_ECF HTH_17 HTH_29 HTH_11 Sigma70_r3 HTH_3 PhyR_sigma-like HTH_28 Phage_terminase HTH_31
Other DBs
NCBI-ProteinID: AGN77465
LinkDB
Position
complement(391523..392041)
AA seq 172 aa
MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGRDQLDTPREP
RAFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEHPSPEALHLILEDLKAIDRLLGKL
SSKARAAFLHNRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALYGEPT
NT seq 519 nt   +upstreamnt  +downstreamnt
ttgtcttctgcacagagcccacacgccgatctggtcggtgcgctgtaccgcgaccaccgc
ggctggctgctcgcctggctgcaacgcagcatggcctgtcgccaacgtgccgaagacctg
agccaggacaccttcgtgcgcctgctcggccgtgaccagctggatacgccccgcgaaccc
cgcgcctttctggccgccgtggccaaggggctgatgttcgaccatttccgccgcgccgca
ctggaacaggcctacctcgccgagctggcactgatcccggaagccgaacacccctcaccg
gaagcgctgcaccttatccttgaagacctcaaagccatcgaccgcctgctcggcaagctg
tcgagcaaggcccgcgcagcgttcctgcacaaccgcctggacggcatgggccatgccgaa
atcgcagagcgcctgggcgtttcagtatcacgggtgcgccagtacatcgcccaaggcatg
cgccagtgctatgtggccctgtacggggagccgacgtga

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