KEGG   Pseudomonas putida H8234: L483_05615
Entry
L483_05615        CDS       T02706                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
pput  Pseudomonas putida H8234
Pathway
pput03030  DNA replication
pput03430  Mismatch repair
pput03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pput00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    L483_05615 (dnaE)
   03430 Mismatch repair
    L483_05615 (dnaE)
   03440 Homologous recombination
    L483_05615 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pput03032]
    L483_05615 (dnaE)
   03400 DNA repair and recombination proteins [BR:pput03400]
    L483_05615 (dnaE)
Enzymes [BR:pput01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     L483_05615 (dnaE)
DNA replication proteins [BR:pput03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     L483_05615 (dnaE)
DNA repair and recombination proteins [BR:pput03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     L483_05615 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DNA_pol_IIIA_C tRNA_anti_2 HHH_3
Other DBs
NCBI-ProteinID: AGN78099
LinkDB
Position
1219859..1223383
AA seq 1174 aa
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTEGQRNGLVILQRDWI
APASEGLIALSAGKEGDIGMALLSGRDEEAQALLQDWMGMFPERFYVEVQRTNRARDEEY
VHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRGYSDQQYLK
SAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKHFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
ADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHF
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDE
IKAYQANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDEAQVDVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYEAEIRRFARQRIIDLKPSRETQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADSFMAAQSLLQADAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHEALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWSIDPADGLIQALRDQFGRENVFLQYR
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggcctg
gtgcggatcaaaccgctggccaaggcgctggccgggatgaacatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtgaagttctacaagacggccatgggcgcgggc
atcaagccgatctgtggtgccgacctgtggctggccggtgccgacccggaagccccgctg
tcgcgcatctgcttcctggccatggaccccaagggttaccgcaacctcaccgagttgatc
tcgcgcggctggaccgaaggccagcgtaacggcctggtcattcttcagcgggactggatc
gcccctgccagcgagggcctgattgccctttcagcgggcaaggaaggcgatatcggcatg
gccttgttgtccggccgggacgaagaagcccaggccttgctgcaagactggatgggcatg
ttccccgagcgcttctacgttgaagtacagcgcaccaaccgcgctcgcgacgaggaatac
gtgcacgcggcggtggcgctggccgacaagcttggtgccccgctggtggccaccaacgac
gtgcgtttcatcaagcaagcggacttcgacgcccacgaaacccgcgtgtgcattggtgaa
ggctggacccttgatgacccgcgccgcccgcgtggctacagtgaccagcagtacctgaaa
tcggccgaggaaatggccgagctgttcagcgacttgcctgatgccatcgccaacaccgtc
gagatcgccaagcgctgcaacatccaggtgcaactgggcaaacacttcctgcccgacttt
cctacgccgaacggcatgggcatcgacgattacctgcgtcacgtttcccacgaaggcctg
gaagagcgcctggcggtactgtggcccaaagagaccacgcccaattacgaagagaagcgc
caggtgtacctggaccgcctgaaattcgagttggatatcattatccagatgggcttcccc
ggttacttcctgatcgtgatggacttcatcaagtgggccaagaacaacggcgtgccggtg
ggacctggccgtggttcgggtgcaggctcgctggtggcctacgtgctgaagatcaccgac
ctcgacccgctggcctacgacttgctcttcgagcgcttcctcaaccctgaacgtgtttcc
atgcccgactttgacgtcgacttctgcatggacggccgggaccgggtgatcgaatatgtg
gccgatgcctacgggcgcaatgcggtcagccagatcatcacctttggcaccatggccgcc
aaggcggtggtgcgtgacgtggcgcgggtgcagggcaagtcctacggcctggccgaccgc
ctgtccaagatgatcccgttcgaagtgggcatgaccctggagaaggcctacgagcaggaa
gaaatcctgcgcgacttcctcaagggtgacgaggacgcccgcgaaatctgggacatggcg
ctgaagctggaaggcgtcacccggggtaccggcaagcacgccggtggtgtggttatcgcg
ccgaccaagctcaccgatttttcgccgatcgcctgtgatgaagagggcggcggcctggtc
acccagttcgacaaggacgacgtcgaggccgccggcctggtcaagttcgacttcctcggc
ctgcgtaccctgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgatctgaacatcgacttcatcccgctggatgaccgcaagacgtacgag
ttgctgcaaaaagcagaaacaacggcggtgttccagcttgaatcccggggcatgaaggag
ctgatcaagaagctcaaacccgactgcctcgaggaccttatcgcactggtggcgctgttc
cgcccgggcccgttgcagtcgggcatggtggacgacttcatcaaccgtaagcacggccgt
gccgagctggcctatccgcacccggattaccagtatgaaggcctgcagccggtgctggcg
cctacctatggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggcg
ggctacaccctcggtggtgcggacatgctgcgccgggccatgggtaagaaaaagcccgag
gaaatggccaagcagcgtggtggtttcatcgaaggttgcgccaacaacggcatcgatgcc
gacctggccggtaacatctttgatctggtggaaaagtttgcggggtatggcttcaacaaa
tcccactccgccgcctatggcctggtgtcctaccagacggcctggctgaaaacccacttc
ccggcgccgttcatggctgccgtgctgtcggcggatatgcataacaccgacaaggtggtc
gtgctggtagaagaagtccgcagcatgaagttgcgcctcgacgcgcccgacgtgaacttc
tccgacttcaagttcaccgtcaacaacgacggccgaatcgtctacggtctgggcgcgatc
aagggcgtcggcgaaggcccggtggaggccattgtcgaggcccgcgcccaaggcgggccg
ttcaaggacctgttcgatttctgtgaacgcatcgacctcaagcgggtgaacaagcgcacc
ctggatgcgctggtgcgcagcggcgcactggaccgcctgggcccgcacttccatgacgag
atcaaggcctaccaggccaacatcgacatcaaccgtgcaactttgctctcggcgctgggc
gaagccatcaaggcagccgagcaggcagcccatacggcggacagtggccatgtcgacctg
tttggcagcatgttcgatgaagcgcaagtcgatgtctatgccaatcaccgcaaggtgcgc
gagctcaccctcaaggagcgcctgaagggcgagaaggacaccttgggcctgtacctcacc
ggtcacccgatcgacgagtacgaggcagagatccgccgcttcgcccgtcagcgcatcatt
gacctcaagccgtcgcgcgagacccagactatcgccggcatgatcattgccctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtcaccctggatgaccgttccggccgc
atcgaggcctccctgttcgctgattccttcatggcggcacagtctttgctgcaggccgat
gccatggtggttgtcgaaggcgaggtcagcaacgatgacttttcgggtggcctgcgcctg
cgggtgaagcaggtgatgaccatggaagatgcgcgcaccaagctggccgagagcctgcgc
ctgaaggtggcacacgaggcgctgaaaggcgaccggctgaagtggctgggcgagctgatc
acgcgccatcgcggtgcttgcccgattaccctggagtacaccggcagcgacgccaaggcc
atgctgcagttcggtgagcagtggtcgatcgacccggccgacgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga

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