Pseudomonas putida H8234: L483_05615
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Entry
L483_05615 CDS
T02706
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pput
Pseudomonas putida H8234
Pathway
pput03030
DNA replication
pput03430
Mismatch repair
pput03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pput00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L483_05615 (dnaE)
03430 Mismatch repair
L483_05615 (dnaE)
03440 Homologous recombination
L483_05615 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pput03032
]
L483_05615 (dnaE)
03400 DNA repair and recombination proteins [BR:
pput03400
]
L483_05615 (dnaE)
Enzymes [BR:
pput01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L483_05615 (dnaE)
DNA replication proteins [BR:
pput03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L483_05615 (dnaE)
DNA repair and recombination proteins [BR:
pput03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L483_05615 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AGN78099
LinkDB
All DBs
Position
1219859..1223383
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AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTEGQRNGLVILQRDWI
APASEGLIALSAGKEGDIGMALLSGRDEEAQALLQDWMGMFPERFYVEVQRTNRARDEEY
VHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRGYSDQQYLK
SAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKHFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
ADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHF
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDE
IKAYQANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDEAQVDVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYEAEIRRFARQRIIDLKPSRETQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADSFMAAQSLLQADAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHEALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWSIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggcctg
gtgcggatcaaaccgctggccaaggcgctggccgggatgaacatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtgaagttctacaagacggccatgggcgcgggc
atcaagccgatctgtggtgccgacctgtggctggccggtgccgacccggaagccccgctg
tcgcgcatctgcttcctggccatggaccccaagggttaccgcaacctcaccgagttgatc
tcgcgcggctggaccgaaggccagcgtaacggcctggtcattcttcagcgggactggatc
gcccctgccagcgagggcctgattgccctttcagcgggcaaggaaggcgatatcggcatg
gccttgttgtccggccgggacgaagaagcccaggccttgctgcaagactggatgggcatg
ttccccgagcgcttctacgttgaagtacagcgcaccaaccgcgctcgcgacgaggaatac
gtgcacgcggcggtggcgctggccgacaagcttggtgccccgctggtggccaccaacgac
gtgcgtttcatcaagcaagcggacttcgacgcccacgaaacccgcgtgtgcattggtgaa
ggctggacccttgatgacccgcgccgcccgcgtggctacagtgaccagcagtacctgaaa
tcggccgaggaaatggccgagctgttcagcgacttgcctgatgccatcgccaacaccgtc
gagatcgccaagcgctgcaacatccaggtgcaactgggcaaacacttcctgcccgacttt
cctacgccgaacggcatgggcatcgacgattacctgcgtcacgtttcccacgaaggcctg
gaagagcgcctggcggtactgtggcccaaagagaccacgcccaattacgaagagaagcgc
caggtgtacctggaccgcctgaaattcgagttggatatcattatccagatgggcttcccc
ggttacttcctgatcgtgatggacttcatcaagtgggccaagaacaacggcgtgccggtg
ggacctggccgtggttcgggtgcaggctcgctggtggcctacgtgctgaagatcaccgac
ctcgacccgctggcctacgacttgctcttcgagcgcttcctcaaccctgaacgtgtttcc
atgcccgactttgacgtcgacttctgcatggacggccgggaccgggtgatcgaatatgtg
gccgatgcctacgggcgcaatgcggtcagccagatcatcacctttggcaccatggccgcc
aaggcggtggtgcgtgacgtggcgcgggtgcagggcaagtcctacggcctggccgaccgc
ctgtccaagatgatcccgttcgaagtgggcatgaccctggagaaggcctacgagcaggaa
gaaatcctgcgcgacttcctcaagggtgacgaggacgcccgcgaaatctgggacatggcg
ctgaagctggaaggcgtcacccggggtaccggcaagcacgccggtggtgtggttatcgcg
ccgaccaagctcaccgatttttcgccgatcgcctgtgatgaagagggcggcggcctggtc
acccagttcgacaaggacgacgtcgaggccgccggcctggtcaagttcgacttcctcggc
ctgcgtaccctgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgatctgaacatcgacttcatcccgctggatgaccgcaagacgtacgag
ttgctgcaaaaagcagaaacaacggcggtgttccagcttgaatcccggggcatgaaggag
ctgatcaagaagctcaaacccgactgcctcgaggaccttatcgcactggtggcgctgttc
cgcccgggcccgttgcagtcgggcatggtggacgacttcatcaaccgtaagcacggccgt
gccgagctggcctatccgcacccggattaccagtatgaaggcctgcagccggtgctggcg
cctacctatggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggcg
ggctacaccctcggtggtgcggacatgctgcgccgggccatgggtaagaaaaagcccgag
gaaatggccaagcagcgtggtggtttcatcgaaggttgcgccaacaacggcatcgatgcc
gacctggccggtaacatctttgatctggtggaaaagtttgcggggtatggcttcaacaaa
tcccactccgccgcctatggcctggtgtcctaccagacggcctggctgaaaacccacttc
ccggcgccgttcatggctgccgtgctgtcggcggatatgcataacaccgacaaggtggtc
gtgctggtagaagaagtccgcagcatgaagttgcgcctcgacgcgcccgacgtgaacttc
tccgacttcaagttcaccgtcaacaacgacggccgaatcgtctacggtctgggcgcgatc
aagggcgtcggcgaaggcccggtggaggccattgtcgaggcccgcgcccaaggcgggccg
ttcaaggacctgttcgatttctgtgaacgcatcgacctcaagcgggtgaacaagcgcacc
ctggatgcgctggtgcgcagcggcgcactggaccgcctgggcccgcacttccatgacgag
atcaaggcctaccaggccaacatcgacatcaaccgtgcaactttgctctcggcgctgggc
gaagccatcaaggcagccgagcaggcagcccatacggcggacagtggccatgtcgacctg
tttggcagcatgttcgatgaagcgcaagtcgatgtctatgccaatcaccgcaaggtgcgc
gagctcaccctcaaggagcgcctgaagggcgagaaggacaccttgggcctgtacctcacc
ggtcacccgatcgacgagtacgaggcagagatccgccgcttcgcccgtcagcgcatcatt
gacctcaagccgtcgcgcgagacccagactatcgccggcatgatcattgccctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtcaccctggatgaccgttccggccgc
atcgaggcctccctgttcgctgattccttcatggcggcacagtctttgctgcaggccgat
gccatggtggttgtcgaaggcgaggtcagcaacgatgacttttcgggtggcctgcgcctg
cgggtgaagcaggtgatgaccatggaagatgcgcgcaccaagctggccgagagcctgcgc
ctgaaggtggcacacgaggcgctgaaaggcgaccggctgaagtggctgggcgagctgatc
acgcgccatcgcggtgcttgcccgattaccctggagtacaccggcagcgacgccaaggcc
atgctgcagttcggtgagcagtggtcgatcgacccggccgacgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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