Pseudomonas putida H8234: L483_24670
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Entry
L483_24670 CDS
T02706
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pput
Pseudomonas putida H8234
Pathway
pput03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pput00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L483_24670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pput03019
]
L483_24670
03400 DNA repair and recombination proteins [BR:
pput03400
]
L483_24670
Enzymes [BR:
pput01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L483_24670
Messenger RNA biogenesis [BR:
pput03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L483_24670
DNA repair and recombination proteins [BR:
pput03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L483_24670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Sigma70_r4_2
HTH_40
HTH_23
ResIII
GerE
HTH_29
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
AGN80063
LinkDB
All DBs
Position
complement(5219690..5221837)
Genome browser
AA seq
715 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLT
VVVSPLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQ
PRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRT
REEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKK
VDETAAFLCDQGFPALPYHAGLAAETRSANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHK
LDAMLALCEETRCRRQSLLAYFDEILEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTG
QRYGVGHLVDVLLGKDNEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLE
GYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTAKTSSSSGGSPASQLVRAEERELWEALR
TLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVLN
NSGGTEEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQELSLDQ
ALDLPEDLLMEVQDAFLDGEGELPPVSAIAPQFGARVPEGVLYCVRAALAAEFEM
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgttctcaaggacatcttcggctacgacagtttccgtggg
cgccaggcagcaatcatcgaatgcgtggccaatggcggcgatgccctggtgctgatgccc
actggtggcggcaagtcgctgtgtttccaggtgccggggctgctgcgcccgggcctgacg
gtggtggtctcaccgctgattgcgttgatggacgaccaggtcgccacgctggacgaactg
ggcgtgtcggctgccgcgctgaactctaccctgacggcggagcagcagcgtgaactggcc
gggcgcctgcgccgtggcgaagtgaagatgctgtacctggcgccggagcgcctggtgcag
ccgcgcatgctcgatttcctgcgcgatctggacatctcgctgtttgccatcgacgaggcg
cactgcgtgtcgcagtggggccacgatttccgccccgaatacctgcaactggggcaattg
gccgagctgttcccgcatgtgccgcgcattgcgctgaccgccaccgccgatatgcgcacc
cgcgaagagattgtccagcgcctgcacctgcaaggcgccgagcgcttcctgtcgagcttt
gaccggccgaacatcttctatcgcatcgtacccaaggaagcgccgcgcaagcagctgatg
gccttccttggcgagcgccgcggcaacgcgggcattgtgtactgcctgtcgcgcaagaag
gtcgacgaaacggcagccttcctctgtgatcagggtttcccggcattgccttatcatgcc
ggcctggctgccgagacccgttctgccaaccagcaccgcttccttaatgaggaagggttg
atcatggtcgccaccattgccttcggcatgggtatcgacaaacccaacgtgcgcttcgtt
gcccacctcgacctgcccaagtcgcttgaggcctattaccaggaaaccggccgtgccggc
cgggacggcttgccatccgatgcctggatggcctacggcctgcaggacatggtcatgctc
aagcagatgctgcagaactccgaaggagacgagcgccacaagcgcatcgagcagcacaag
ctcgacgccatgctggcgttgtgtgaagagacccgctgccgccgccagtcgttgctggcc
tatttcgatgaaatcctcgagcagccgtgcgggcactgcgacaactgtgtcgacaacatt
cagacctgggacgccaccgagccggcccgtcaggcgctgtcggcggtgttccgcactggc
cagcgctatggtgtcggccacctggtcgatgtgctgttgggcaaggacaacgagaaggtg
cgcaatttcggccacgagaagctgtcggtgttcggcgtcggcaagggcctggccgaggtc
gagtggcgttcgttgttccgccagctggtggcgcgtgggctggtcgacatcgacctggag
ggctatggcggcctgcgcctgtccgacagctgccggccactgctgcgcggcgaggtgacc
ttgcaactgcgtcgcgacctcaagccgcagaccacggccaagacctcatcgtccagcggt
ggcagcccggccagccagttggtgcgtgccgaggagcgcgagctgtgggaagcgctgcgt
accctgcggcgcaagctggcggaggagcacagtgtgccgccctatgtcatcttccccgac
tcgacgctgctggaaatgctgcgcagccagccggtcagcctcagcgatatggcccaggtc
agcggtgtgggggcgcgcaagctggagcgttatggccaggcgttcctcgaggtactgaac
aacagcggtggcaccgaagaggcgccgaaagtggtactcgacctgcgccacgaactggtc
agcctggcccgggccggcatgaccccggcacagatcgccgggcagctcaactgcagcgag
aagaacgtgtatagcctgctggccgaggcgttgggccgccaggagcttagccttgaccag
gccctcgacctgccggaagacctgctgatggaagtacaggacgccttcctggacggcgag
ggcgaactgccgccggtgtcggccattgcgccccagttcggggcacgggtgccggagggt
gtgctgtattgcgtgcgtgcggcgctggcggccgagttcgagatgtga
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