Pseudomonas putida H8234: L483_27890
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Entry
L483_27890 CDS
T02706
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pput
Pseudomonas putida H8234
Pathway
pput03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pput00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
L483_27890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pput03400
]
L483_27890
Enzymes [BR:
pput01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
L483_27890
DNA repair and recombination proteins [BR:
pput03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L483_27890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_25
MinC_N
Motif
Other DBs
NCBI-ProteinID:
AGN80571
LinkDB
All DBs
Position
complement(5903665..5907339)
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AA seq
1224 aa
AA seq
DB search
MTQDRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFARELLPPQILVV
TFTDAATKELRERIRARLAEAARFFRGELEGADPLLHQLRDDYPQEAWPRCAGRLEIAVQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCYGMQGDA
LAWVRDNWGSPDALLPRIRPLFGRVRAQQDGPEPAALIQASLQQRGEQLARLKAPWAQWA
EELRQICRDALAAKQVDGRKMQARYFEPWFDKLCAWAGDEQRVELDLGTGFTRLTPAGMA
EAWKGEPPEHPGLNAMQSLQQQLQALDSPDAALLEHAANWVSARFEVEKRRRAEMGFDDM
LVRLQHALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYPVSENRAETGLFM
IGDPKQAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAG
RGAFLFREADDNPLPFVEVRAKGRGEQLLIDGVASAALHCWQLQSEEPVSSSVYRQQLAA
SCASHIVALLNGGQQGTAGFQNAEGELRPCLPSDIAILVRDGHEAQMVRAELAARDVRSV
YLSDKDSVFTAQEAHDVLAWLKACAEPDSERLLKAALASLTLGLSLVALDRLNQDERVWE
GWVMRFRHYRDTWQRQGVLPMLRHLLHDFELPRTLVRRSDGERVLTNLLHLAELLQQAAG
ELDGEQALIRHLADHLASSGQVGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICT
SKPVDGSRLPLAWHDSEGNAHLTLTPDPLQIERADDERLAEDLRLLYVALTRAQHACWLG
VADLKRGNQKTSQLHRSAFGYLLGGGLALAGSEQLAGWLQALASTCPYITCSGLPQADDR
VYRMPHAECERVPARKPRRAAAEHWWIASYSALRIGDQTLVADSSQAQQLLDDEVVDAQI
LREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSQVSENPQQIERTVGQRCNRRDWA
GWIPTLSHWMQRLLGETLPLPGCEKGVTLGQLRHYQIEMEFWFASHRVDTEQLDRLVARH
IHPGLARPAAQPTVLNGMFKGFIDLAFELDGRYYVTDYKSNWLGPDIQAYDAMAMEKAIL
EHRYDLQYVLYLLALHRQLRARLPDYDYDRHVGGALFIFLRGASSSGHGVYHTKPPRELI
ERLDALFRGEHPPAQQDLFAGAVI
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaccgtcccctggcactgagtttccccctgcacggcagccagctgatcgag
gccagcgctggcacgggcaagacctttaccatctcggcgctgtacttgcgcctgatcctc
ggtcatgggggcgagcagggcttcgcacgcgagctgctgccaccgcaaatcctcgtggtc
accttcactgatgcagccaccaaagagctgcgcgaacgcatccgcgcgcgcctggcggag
gctgcacggttcttccgtggcgaactggaaggcgccgatccgctgttgcaccaactgcgt
gacgattacccgcaagaggcttggccacgttgtgccggccgcctggaaatcgccgtgcag
tggatggacgaggcggcggtatcgaccatccacggctggtgccagcgcatgctgcgtgag
catgccttcgacagcggcagcctgttcacccagaccctggaaaccgaccacagcgagttg
ctgggccaggtgatgcgcgattactggcggcgcttctgctatggcatgcaaggtgacgca
ctggcctgggtgcgtgacaactggggtagccccgatgctttgctgccgcgcattcgccca
ctgttcggccgcgtgcgtgcccagcaggatgggccagagccagccgcattgatccaggcc
tcgctgcagcaacgtggcgaacagttggccaggctgaaagcaccgtgggcgcagtgggcc
gaagaactgcggcagatctgccgcgatgcgctggccgccaagcaggtcgatggccgcaag
atgcaagcccgttacttcgagccttggttcgacaagctctgcgcctgggccggggatgag
caacgggtagagctcgacttgggcacgggcttcacccgcctgaccccggcgggcatggcc
gaggcctggaagggggaaccgcccgagcacccgggcctgaacgccatgcagagcttgcag
cagcaattgcaggccctggacagtccggatgccgccctgctcgagcacgcggccaattgg
gtatcggcgcgtttcgaagtggagaagcgccggcgtgcagaaatgggcttcgacgacatg
ctcgtgcgcttgcagcacgccctcgccagcgaggccggcgagcgcctggccagcctgatc
cgcgaacagttcccggtagccctgatcgacgagtttcaggataccgacccggtgcagtac
ggcattttcgagcgcatctaccctgtcagcgaaaaccgcgcagaaaccggcctgttcatg
atcggcgaccccaagcaggcgatctacgcctttcgaggggccgacatctacacctacctt
gctgcccggcgcgccaccagcggccgcctgcacagcctggacaccaactaccggtccagc
aaggccatggtcgcggcggtcaaccaggtgttcctgcaggccgaggcgcgtgaggcgggg
cggggggcgttcctgttccgcgaggccgatgacaacccgttgccgttcgtcgaggtccgc
gccaagggccgtggcgaacagctgctgattgacggggttgccagtgcagccctgcactgc
tggcagctgcaaagcgaagaaccagtctccagcagtgtctaccgccagcagctggcagcc
agttgcgccagccatatcgtcgccttgctcaatggcggtcagcagggcacggcgggcttc
cagaatgccgagggcgaattgcgcccgtgcctgccctccgacattgccatcctggtgcgt
gacgggcatgaagcgcagatggtgcgcgccgaattggccgcacgcgatgtgcgcagtgtg
tacctgtcagacaaagactcggtattcacggctcaggaggcccacgatgtgctggcctgg
ctcaaggcctgcgccgagccagactcggagcgcctgctcaaggcggccctggccagcctc
accctgggcttgtcgctggtagcgctggaccgcttgaaccaggacgaacgggtctgggaa
ggctgggtcatgcgttttcgccattatcgcgatacctggcaacgccaaggcgtgttgccc
atgctgcggcacctgctgcatgacttcgagctgccgcgcacgctggtccgccgcagtgat
ggcgagcgtgtcctgaccaacctgctgcacctggccgagctgttgcagcaggcggcgggt
gagctggacggcgaacaggcgctgatccgccacctcgccgatcatctggccagttccggg
caggtcggtgaagagcagatcctgcgtctggaaagcgacgagcagctggtcaaggtggtg
accatccacaagtccaagggcctggagtatcccttggtctacctgccgttcatctgcacc
agcaagccggtggatggcagccgcctgccactggcctggcatgacagcgaaggtaacgcc
cacctcaccctcaccccggacccgctacagatcgagcgcgccgatgacgagcgcctggcc
gaagacctgcgtctgctctacgtagccctgacccgtgcccagcatgcttgctggctaggt
gttgccgacctcaagcgcggtaaccagaagacttcgcagctgcaccgctcggcttttggc
tacctgctgggtggcggccttgccctggcgggctcggagcagcttgcaggctggttgcaa
gcgttggcgtcaacatgcccgtacatcacctgctcgggcctgccgcaggctgatgaccgg
gtgtatcgcatgccgcacgccgaatgtgagcgtgtgcccgcacgcaaaccgcgccgcgcg
gcagccgagcattggtggatcgcctcgtatagcgccctgcgcatcggcgatcagacgctt
gttgccgacagctcgcaggcacagcagttgctggatgacgaagtggtcgatgcccagata
ctgcgagaggtaccggccgacagtggcgatatccaccgctttccgcgagggccgaaccct
ggcactttcctgcatggcttgctggaatgggccggccgggagggcttcagccaggtcagc
gaaaaccctcagcagatcgagcgtaccgtgggccagcgctgtaatcgccgtgactgggcg
ggctggattcccaccctcagccactggatgcaacgcctgctgggcgagacgctgccattg
ccgggctgtgaaaagggcgtgacgctcgggcagttgcgtcattaccagatcgaaatggag
ttctggttcgccagccaccgggtcgacaccgaacaactcgaccgcctggtggcgcgccac
atccaccccggcctggcgcgcccggcggcgcagccgaccgtgctcaacggcatgttcaaa
ggtttcatcgacctggcgttcgagctggatgggcgttactacgtgactgactacaagtcc
aactggctgggcccggatatccaggcctacgacgccatggccatggaaaaggccattctc
gagcaccgctacgacctgcagtacgtcttgtacctgctggccctgcaccgccagttgcgc
gctcgcttgccggactacgattacgaccgccatgttggcggtgcattgttcatcttcctg
cggggcgccagcagcagtggccacggtgtgtatcacaccaagccaccgcgcgagctgatt
gaacgccttgatgcgctgttccgtggcgagcacccgccggcacagcaagacctgtttgcc
ggagccgtgatatga
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