Pseudomonas putida H8234: L483_28940
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Entry
L483_28940 CDS
T02706
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pput
Pseudomonas putida H8234
Pathway
pput03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pput00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L483_28940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pput03019
]
L483_28940
Enzymes [BR:
pput01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L483_28940
Messenger RNA biogenesis [BR:
pput03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L483_28940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGN80667
LinkDB
All DBs
Position
complement(6109382..6110704)
Genome browser
AA seq
440 aa
AA seq
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MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR
QTLLFSATFSDQIRVLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKEELFCHLLR
KQRWSQVLVFAKTRNGVDQLVSRLLAEGVNADGIHGDRPQATRQRALDSFKAREIQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLGAIE
VLTRQTLPRHEEPDFIPDHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGRWMDSGEPEP
AVKAVRKVPSFNGGPRKRKP
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgccaaactcggcctgatcgaacccctgctgcgcacgctgcagcagctggac
tacaccaccccgaccccggtgcaggccaaggccatccccgccgtgctggccggccgcgac
ctgatggccgcggcccagaccggcaccggcaagaccgcaggctttgccctgcccgtgctg
cagcgcctggcactggagggcgagaaggtggccagcaactcgatccgcgcgctggtgctg
gtgcctacccgtgagctggccgagcaggtgcacaacaacgtgcgcgagtatgccgagaac
ctgcccctgagcacttacgcggtgtacggcggcgtcagcatcaacccccagatgatgcgc
ctgcgccgtggcgtcgacctgttggtggccaccccgggccgcttgctcgacctgttccgg
cagaatgcggtgaagttcaaccaggtgcagacgctggtgctggacgaagctgaccgcatg
ctcgacctgggctttgccgaagaactgcaatcggtgtacgccgcgctgccgcgcaagcgc
cagacgctgttgttttctgccacgttctctgaccagattcgcgtactggcggggctggcg
ttgaatgacccgctcagtatcgaagtgagcccgcgcaacgccactgcaaccagcgtcaaa
cagtggctggtgcctgtggacaaaaagcgcaaggaagaactgttctgtcacctgctgcgc
aaacagcgctggagccaggtgctggtgtttgccaagacccgtaacggtgtcgaccagttg
gtgtcgcgcttgctggccgaaggcgtaaacgccgacggcatccacggtgaccgcccgcag
gccacccgccagcgggcgctggacagcttcaaggcccgcgagattcaggtactggtggcg
accgacgtggcggcccgtggcctggatatcgacgacctgccgctggtggtcaacctcgac
ctgccgatcgtcgccgaggattacgtgcaccgcatcgggcgtaccgggcgggcgggtaac
aagggcgaggcgatttcgctggtgtgcgcggatgaagtgcagttgctgggggctatcgaa
gtgctgacccggcagaccctgccacgccatgaagaaccggatttcatccctgatcaccgg
gtgccgatgaccgacgccagtggccaggtgatcaagaagccgaagaaacccaaaaagccg
aaagagaacagcgccaagcgcgggctggggcgttggatggacagtggggagccggagccg
gcagtgaaggcggtgcgcaaggtgccgagcttcaatggtgggccgcgtaagcgtaagcct
tga
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