Pseudomonas putida H8234: L483_30050
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Entry
L483_30050 CDS
T02706
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pput
Pseudomonas putida H8234
Pathway
pput03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pput00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L483_30050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pput03019
]
L483_30050
Enzymes [BR:
pput01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L483_30050
Messenger RNA biogenesis [BR:
pput03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L483_30050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGN80857
LinkDB
All DBs
Position
6349861..6351738
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AA seq
625 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACVFGGVGMN
PQVQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPSKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTRQKIADGDLMGFDASQVEAEKPEVRERPQNNGRGGRNQPRGEGGKDANGGRK
DKGKDKGKAKQPAAGKPADKEKSGDKPQQRKPRDNKPRQQQASQNSVPKPPADRAPDEFL
DDEVDNFGNRADYVSPYQGKNQGRNRRPGGGTGAGQSQGGAAPRSNGGGGQARNGGQPRT
ANGEKRPPRNNNGGGARRDGGGRGRPARDDAARQEPAVRNTRQPEKQPVIIRKESKLDRF
PTPEQLDDLPSRPRGERPALLTRKG
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tatacccagccgacccccgtgcaacagcgggcgattcccgccgtgttgcaaggccgcgac
ctgatggttgccgctcagacaggtactggtaaaaccggcggcttcgccctgccgattctc
gagcgcctgttccccgccggtcaccccgacaagtcgcagcgccacggccctcgccagcct
cgcgtgctggtcctgaccccaacccgggagctggcagcccaggtgcacgacagcttcaag
gtctatgcccgtgacctgccactggtcagcgcctgcgtcttcggcggcgttggcatgaac
ccgcaagtccaggcgattgccaagggcgttgacgtgctggttgcctgcccgggccgcctg
ctcgacctggccggccaaggcaaggtcgacctggcccatgtcgaaatcctggtgctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtactggcgcgc
ctgccatccaagcgccagaacctgctgttttcggccaccttctccaaggacatcaccgac
ctcgccgacaagctcctgcataacccggagcgtatcgaggtcacgccgccgaacaccact
gtcgaacgtatcgagcagcgtgtctaccgcctgcctgccagccacaagcgtgcgctgctg
gcacacctgatcaccctgggtgcctgggaacaggtactggtgtttacccgtaccaagcac
ggcgccaaccgtctggccgagtacctggaaaagcaaggcctgaccgctgccgcgattcac
ggtaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccaacagcgtc
cgcgtactggtcgccaccgacatcgctgcccgcggcctggacatcgaccagttgccccac
gtggtcaactttgagctgccgaatgttgaggaagattacgtgcaccgcatcggccgtact
ggccgcgccggtcgctcgggcgaggccatttcgctggtcgcgccagatgaagagaagttg
ctcaagagcattgagcgggttacccggcagaagatcgcggacggcgacctgatgggcttc
gacgccagccaggtagaagccgaaaaaccggaagtacgcgaacgcccgcagaacaacggc
cgtggcggtcgcaaccagccccgcggcgaaggtggcaaagacgccaacggtggccgcaag
gacaaaggcaaggataaaggcaaggccaagcagccagcggccggcaagcctgcagacaag
gaaaagtccggcgacaagccgcagcagcgcaagccgcgtgacaacaagccgcgccagcag
caggccagccagaacagcgtgcccaagccgccagccgaccgtgccccggatgagttcctg
gatgacgaagtcgacaacttcggtaaccgcgccgattacgtcagcccgtaccaaggcaag
aaccagggacgtaaccgtcgtcctggcggcggtactggtgcaggccagagccaaggaggt
gctgccccgcgtagcaacggtggcggtggtcaggctcgcaacggcggccagccacgcact
gcaaacggtgagaagcgcccgccgcgcaataacaacggtggtggtgctcgccgtgatggc
ggtggccgtggccgcccggcccgtgacgatgctgcccggcaagagccggccgtgcgcaac
acgcgccagccggaaaaacagccggtgatcatccgcaaggagtccaagctcgaccgtttc
ccgacgcctgagcaactggatgatctgccgagccgcccgcgcggtgagcgtcccgccctg
ttgacccgaaaaggttaa
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