Pseudomonas sp. UW4: PputUW4_00070
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Entry
PputUW4_00070 CDS
T02357
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03030
DNA replication
ppuu03410
Base excision repair
ppuu03420
Nucleotide excision repair
ppuu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PputUW4_00070 (polA)
03410 Base excision repair
PputUW4_00070 (polA)
03420 Nucleotide excision repair
PputUW4_00070 (polA)
03440 Homologous recombination
PputUW4_00070 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppuu03032
]
PputUW4_00070 (polA)
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_00070 (polA)
Enzymes [BR:
ppuu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PputUW4_00070 (polA)
DNA replication proteins [BR:
ppuu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PputUW4_00070 (polA)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PputUW4_00070 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PputUW4_00070 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AFY17279
LinkDB
All DBs
Position
70409..73213
Genome browser
AA seq
934 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPNSPFAVVFD
AKGGTFRDDMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR
SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSSMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKVDVPLDIGLDDLQMGAEDPAKLYELYSLLEFKSWLNDLDRDAKRLELSA
AAEPAPANDLFSEPEAEAPAAAAEAAYETILDQARFDAWLEKLNNAKLFAFDTETTGIDA
QQAQLVGLSFAVQANEAAYIPLTHSYIGVPQQLDRDTVLRALKPILEDPNKLKVGQHAKF
DMNILANCAIGGVQDNGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQD
IAGKGVKQLTFDQIALEQAGPYAAEDADITLRLHQALFEKLSAIPSLASVLTDIEIPLVP
VLARIERQGAFVDAALLGVQSIELGDKMVALEREAFEIAGEEFNLGSPKQLGVILYEKLG
LPVLKKTAKGQPSTAEEVLAKLAEDDYRLPKVLMEYRSMSKLKSTYTDRLPEQINPRTGR
IHTSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPAGYKLLAADYSQIELRIM
AHLSRDEGLMNAFRHNLDVHTATAAEVFKVELADVTSDQRRSAKAINFGLIYGMGAQKLG
KDIGVDTKTAKAYIDTYFARYPGVRQYMDRTRAQAAEQGYVETFFGRRLYLPDINSNKPQ
ERAAAERTAINAPMQGTAADIIKKAMVAVDNWLTASGLDAKVILQVHDELVLEVREDLVD
KVRDEIRVHMSEAAKLDVPLLVEVGVGNNWDEAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcttcttacctgtaccgcgcctttcac
gcgctgccaccgctgaccacgtccaaaggcctgccgaccggcgcggtcaagggcgtgttg
aacatgctcaagagcctgcgcaagcaatatccgaatagtccgtttgccgtggtgttcgac
gccaagggtgggacttttcgcgatgacatgtacgccgaatacaaggccaaccgtccgagt
atgcctgacgacatgcgcgtgcagatcgagccgctgcaccagagcgtgatcgccctgggc
ttcccgctgctgtgcgtcgaaggcgtagaggccgatgacgtgatcggcaccctggcccgc
agcagtgcggcggcggatcgtccggtaatcatctccacgggcgacaaggatatggcgcaa
ctggtcgatggtcacattaccttggtcaacaccatgaccggtagcagcatggacgtggag
ggcgtgaaggagaaattcggcgtcgctccggagcagatcatcgattatctggcgctcatg
ggcgattcttccgacaacattccgggcgttccggggattggcccgaagacggcttcaggc
ctgctggtcggtgtgaacggcggtctgaccgagctctatgcgcagctcgacatcgtgcca
accctgccgattcgcggtgccaagaccctgccggccaagctcgaagagcacaaggaaatg
gccttcctttcctatcagttggcgaccatcaaggtcgacgtaccgctggacattggcctc
gacgacctgcaaatgggcgcggaagatccggcgaaactctacgagttgtacagcctgctg
gagttcaagagctggctgaacgaccttgatcgcgacgccaaacgcctggaactgagcgct
gccgccgagcctgcaccggccaacgatctgttcagcgaaccagaggccgaagcaccggcc
gccgctgctgaagccgcctacgaaaccatcctcgatcaggcgcgtttcgatgcctggctg
gaaaagctgaacaacgccaagctgtttgccttcgacaccgaaaccaccggcatcgacgcg
cagcaggcgcaattggtggggctgtcattcgcggttcaggctaacgaagcggcctacatc
ccgttgacccattcctacatcggcgtgccgcagcagctggatcgcgacacggtcctgcgc
gcgctaaagccgattctggaagacccgaacaagctcaaggtcggccagcacgccaagttc
gacatgaacatcctggccaactgcgcaatcggtggcgtacaggacaacggcatcaccgtg
cgcggcatcgccttcgataccatgctcgagtcctacgtgctcaactccacggccacgcgc
catgacatggacagcctggctcagaagtatctggaccacaccacggtgagcttccaggac
atcgccggcaaaggcgtgaaacagctgacgttcgatcagatcgcccttgagcaggccggg
ccttacgccgccgaagatgcggacatcaccctgcgactgcaccaggccctgttcgaaaag
ctctcggccattccgagcctggccagtgtgctgaccgacatcgaaatcccgctggtgccg
gtgctggcgcgcatcgagcgccagggcgcattcgtcgacgccgctctgctgggcgtgcaa
agcatcgagctgggcgacaagatggtcgcacttgagcgcgaagccttcgagattgctggc
gaggaattcaacctcggttcgcccaagcagctcggcgtgatcctctacgagaaactcggc
ctgccagtgctgaaaaagactgccaagggccagccgtccacggccgaagaggtgctggcc
aagctggcggaagacgactaccgattgccgaaagtgctcatggaatatcgctccatgagc
aagctgaaaagcacttacaccgatcgtttgccggaacagatcaacccgcgcaccgggcgg
atccatacgtcttaccaccaggctgtcgcctccaccgggcgcctgtcctccagcgatccg
aacctgcagaacatcccggtgcgtaccgccgaagggcgtcgtatccgccaggccttcgtg
gccccggccggttacaagctgctggcggcggactactcgcagatcgagttgcggatcatg
gcgcacctgtcacgggatgaagggctgatgaacgccttccgccacaatctggacgtgcac
accgcgaccgccgccgaagtgttcaaggtcgaactggccgacgtgacctccgaccagcgc
cgcagcgccaaggcgatcaacttcggcctgatctacggcatgggggcgcagaagctcggc
aaggacattggcgtcgacaccaagaccgccaaggcttacatcgatacctacttcgcccga
taccccggcgtacgccagtacatggaccgcacgcgtgcccaggccgccgagcaaggttat
gtcgagacgttcttcgggcgtcgcctgtatctgccggacatcaactccaacaagccgcaa
gaacgcgccgccgccgaacgcacggcaatcaacgcaccgatgcaaggcaccgctgcggac
atcatcaagaaagccatggtcgctgtggataactggctgaccgcgtccggcctcgacgcc
aaagtcattttgcaggtgcacgatgaactggtgctggaggtgcgtgaagacctggtcgac
aaggttcgcgatgaaattcgcgtacacatgagcgaagccgcgaaactggacgtgccgttg
ctggtcgaagtgggtgttggaaataactgggatgaggctcactga
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