Pseudomonas sp. UW4: PputUW4_00218
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Entry
PputUW4_00218 CDS
T02357
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputUW4_00218 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuu03019
]
PputUW4_00218 (recQ1)
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_00218 (recQ1)
Enzymes [BR:
ppuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PputUW4_00218 (recQ1)
Messenger RNA biogenesis [BR:
ppuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PputUW4_00218 (recQ1)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PputUW4_00218 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
HAD
Penicillinase_R
Motif
Other DBs
NCBI-ProteinID:
AFY17426
LinkDB
All DBs
Position
244684..246618
Genome browser
AA seq
644 aa
AA seq
DB search
MHNTLEQVFGYPQFRAGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGISAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFR
HFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQVLLLTATATPRVIADM
QAKFAIAADDVVTTGFYRPNLNLLVEPVRGADKRRRLVEWMSQRADQPSIVYVTLQKTAE
HIAEHLNRNGIQAEAYHAGLPHEQREAIQRRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELDGIRCVMDEMQ
AAAPEGQWEFLLGPLADQSNIRQLPLKTLLVQLELRGLIAPRYAYYAEYRFKYLEEPEAL
LARFEGERRDFVAAIIQTSSRARTWATVSFEALHEQHQAERSRVVKALDYFQEKGWVELE
SKQMTEVYSVLQSGFDSTALSEELHRYFTRHEHTEVARIHAMLDLFATDRCLGYRLAEYF
GDHNAPQQCGHCSVCHGQVARLPAPPELPALVDKNFEALCGDFIHRHEQHTGNVPSAERV
TRFLCGISVPLFTKLKARAIPGFAALEDYPYAEVRGWAQRHLAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctggaacaggttttcggttatccacagtttcgagccggtcaggaggcg
gccgtcagtgccgtgctggccgggcgttcggcggcggcgatttttcccaccggttccggc
aaatccctttgctaccaattgccggcgctgttgctgccgcacctgacgctggtggtctcg
ccgttgctggcgttgatgcaggatcaactggcgttcctgcaacgccacggcatctcggcg
ggcagtatcgattcggcccagagccgcgatgacgccagcgacgtcatggctcgggcaaaa
tccggcgaactgaagattctgatgatctcggtggaacgcctgaagaacgagcgcttccgg
cattttctgcagcaagtaccgatctcgctgctggtggtggacgaggcgcattgcatctcc
gaatgggggcacaactttcgcccggactacctcaagctgcccgactatcaacgccagttc
aatatcccccaggtgctgctgctgaccgcaacggcgacgcccagggtcatcgccgacatg
caggcgaaattcgccatcgccgccgacgatgtggtgaccaccggtttttatcgcccgaac
ctcaatttgctggtggagccggttcgtggagcggacaagcgcagacgcctcgtcgaatgg
atgagccagcgtgcggaccagcccagcatcgtctatgtcaccttgcagaaaaccgccgag
cacatcgccgaacacctgaaccgcaacggcattcaggccgaggcctatcacgccgggttg
ccccatgagcaacgggaagcgatccagcgtcgcttcatgggcgggcagtccaattgcatc
gtcgccaccatcgctttcggcatgggcatcgacaaaagtgacatccgcaatgtggtgcat
ttcgacctgcccaaatccatcgaaaactacagccaggaaatcggtcgcgccgggcgtgac
gggcagccgtcggactgcctggtgttggccaaccgcgacagcctcaacgtgctggagaac
ttcgtctacggcgacacccccgagctcgatggcatccgttgcgtgatggacgagatgcag
gccgcagcacccgaagggcagtgggagtttctgctggggccgttggcggaccagagcaat
attcgccaattgccgctcaagaccttgctggtgcaacttgaactgcgcggtttgatcgcc
ccgcgttacgcgtactacgccgagtatcgattcaagtatctggaggagcccgaggcattg
ttggcgcgttttgaaggcgagcgcagggattttgtcgctgcgatcatccagacctccagc
cgcgcccggacctgggccacggtgagtttcgaggcgttgcacgagcagcatcaggccgag
cgcagtcgagtagtgaaggcgctggactacttccaggagaagggttgggtggagctcgaa
agcaagcagatgaccgaggtctacagcgtgctgcaaagcgggttcgacagcaccgcgttg
agcgaagagctgcaccgttatttcactcggcatgaacacaccgaggtcgcccggattcac
gcgatgctggatctgttcgccaccgaccgttgtctgggctatcgcctggccgagtatttc
ggcgaccacaatgctccgcagcaatgcggacattgttcggtgtgtcatgggcaagtggcg
cggctaccggcaccaccggagttgccggcgcttgtggataaaaatttcgaggcgttgtgt
ggcgactttatccacaggcacgagcagcacacgggcaacgtgccttcggctgaacgcgtg
acgcggtttttatgcgggatcagcgtgccactgttcacaaaactcaaggcacgggcgatt
cccggatttgcggcgctggaagattatccgtacgccgaggtacgcgggtgggcccagcgg
catctggcagcctga
DBGET
integrated database retrieval system
