Pseudomonas sp. UW4: PputUW4_00710
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Entry
PputUW4_00710 CDS
T02357
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputUW4_00710 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuu03019
]
PputUW4_00710 (pnp)
03016 Transfer RNA biogenesis [BR:
ppuu03016
]
PputUW4_00710 (pnp)
Enzymes [BR:
ppuu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PputUW4_00710 (pnp)
Messenger RNA biogenesis [BR:
ppuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PputUW4_00710 (pnp)
Transfer RNA biogenesis [BR:
ppuu03016
]
Prokaryotic type
tRNA degradation factors
PputUW4_00710 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AFY17917
LinkDB
All DBs
Position
849571..851676
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV
AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA
TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgcatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtagtcggtgccaagcaagccgatccaggcaagggcttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggcaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgatcgtccgatccgt
ccgctgttccctgaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaaaaagaccgatccggacatcgctgcgatgatcggtacctcggctgccctggcgatc
tccggcattcctttcgatggcccgatcggcgctgcccgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacttacgagcagcaagctgcttcgagcctggacatggtcgtt
gccggtacttcggacgccgtgctgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgcggtactgtttgctcacgacgaattccaggttgtgatcaacgcggtc
aaagaactggctgccgaagctgccaagccaacctggacctgggctcctgcgccagaagcc
accgaactgctgggcgctatccgtgccgagttcggcgaagcgatctcccaggcctacacc
atcaccgtcaaggccgaccgttacgctcgcctgggcgagctgaaggaccaggtcgttgcc
aagctgtccggtgaagaaggccagccttcttccagcgaagtcaaagcggctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtaaacggcaagccacgtatcgacggtcgc
gacaccaagaccgtacgtccgttgaacatcgaagtcggtgttctgccaaaaacccacggt
tcggccctgttcacccgtggcgaaacccaggctctggtcgttgcaactctgggtactgcc
cgtgatgcacagctgctcgataccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggtgctggtcgtcgt
gaaatcggtcacggccgtctggcccgtcgttcggtttcggccatgctgcctgccgctgac
gtgttcccgtacaccatccgtgtagtgtcggaaatcaccgaatccaacggttcgagctcg
atggcatccgtttgcggcgcttccctggccctgatggacgctggcgttccaatgaaggct
ccggttgccggtatcgccatgggtctggttaaagaaggcgagaaattcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggtgacatggacttcaaggtagccggtactgcc
aaaggcgtcaccgcgctgcagatggacatcaagatcaagggcatcaccgaagaaatcatg
gagatcgctctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcattggccagtcgcgtaccgaactgtcggccaacgctccgaccatgatcgcgatgaaa
atcgacaccgacaagatccgtgatgttatcggtaaaggcggcgcgaccatccgtgcgatc
tgcgaagaaaccaaggcttcgatcgacatcgaagacgacggttcgatcaagatcttcggc
gaaaccaaggaagctgctgaagctgcgcgtcagcgcgttctgggtatcaccgctgaagcc
gagatcggcaagatctacgtgggcaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgccaggcaaggatggtctggttcacatctccatgctgagcgacgctcgcgta
gagaaagtgaccgacatcctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaagacgtggcagcagccaaggcttcgggc
gtttaa
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