Pseudomonas sp. UW4: PputUW4_01115
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Entry
PputUW4_01115 CDS
T02357
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ppuu
Pseudomonas sp. UW4
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppuu03016
]
PputUW4_01115 (truD)
Enzymes [BR:
ppuu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
PputUW4_01115 (truD)
Transfer RNA biogenesis [BR:
ppuu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PputUW4_01115 (truD)
Prokaryotic type
PputUW4_01115 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AFY18322
LinkDB
All DBs
Position
1321587..1322645
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AA seq
352 aa
AA seq
DB search
MNELQLLGPRAYGEALGTAVLKAIAEDFQVDEVLDIPLSGEGEHLWIWVEKRGLNTEEAA
RRIAKAAGVPLRTVSYAGLKDRQALTRQWFSVQLPGKADPDLTAAENDTLKILKTARHKR
KLQRGAHSANGFTLRLTQFAGDKPALEERLQLIAKQGIPNYFGAQRFGHDGGNVVDARAW
AARKALPEQRNVRSRLLSTARSFLFNQVLAARVADGTWQRAQVGDLLAFTDSRSFFPAGE
AECSDPRLAILDLHPTGPQWGEGDSPATGGVHELEQAIAAREADLRDWLINAGMSHERRI
LRLPIGGLTWHYPSPDILQLEFVLPAGCFATVLVRELVDLVPVGQTDSPCVF
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgcaattgctcggccctcgggcttacggtgaggccctcggcacggcggtc
ctcaaggcgatcgcggaagacttccaggtcgacgaagtcctcgacattcccctcagtggc
gaaggcgaacacctgtggatatgggtggaaaagcgcggcctgaatactgaagaagcggcg
cgccggattgccaaggctgcgggtgtgccgttgcgtaccgtcagttatgccgggctcaag
gaccgtcaggcgttgactcgccagtggttcagcgtgcagctgccgggcaaggccgaccct
gatctgacagccgcggaaaacgatacgctgaagatcctcaagaccgcccgccacaagcgc
aagctgcaacgtggcgcgcactcggccaacggcttcaccttgcgcctgacgcagttcgcc
ggtgacaagcctgcgcttgaagagcgtctgcaactgatcgccaagcaaggcatccccaac
tatttcggtgcccagcgtttcggccatgacggcggcaacgtcgtcgatgctcgcgcctgg
gccgcacgcaaggccttgccggagcagcgcaacgtgcgctcgcggctgctctccacggcg
cgcagttttctgttcaaccaggtattggccgcacgtgtcgccgacggcacctggcagcgt
gcccaggtgggcgatctactggcgtttactgacagccgcagctttttcccggcaggcgaa
gccgagtgcagcgacccgcgcctggcgattctcgatctgcacccgaccggtccgcagtgg
ggcgaaggtgactcgccggccacggggggtgtccatgaactggagcaggccatcgccgca
cgcgaagcggatttgcgtgattggctgatcaacgccggtatgagccacgaacgtcgcatc
ctgcggctgcccattggcggtttgacgtggcattatccctcgcctgacattctgcaactg
gaattcgtcctgccggccggatgcttcgccaccgtattggtgcgtgagcttgttgatctg
gtgccggtggggcagacggacagcccatgcgtattctga
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