Pseudomonas sp. UW4: PputUW4_01299
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Entry
PputUW4_01299 CDS
T02357
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppuu
Pseudomonas sp. UW4
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppuu03016
]
PputUW4_01299 (rnd)
Enzymes [BR:
ppuu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PputUW4_01299 (rnd)
Transfer RNA biogenesis [BR:
ppuu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PputUW4_01299 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AFY18505
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All DBs
Position
1514944..1516077
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGRFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGERAYLIDPL
TIDNWQPLAALLENPAVLKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVKLRPKLSDEKYAWV
LEDGAELVANLRREIDPYEVYRDAKLAWKLSRAQLVVLRELCAWREKEARARDLPRNRII
REHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDLIKRSGSVSPDQWPPSVPEPL
PVDAAVLLKQLKAIGQAEAERLNIAPELMLRKKTLEALLKSGFPNGPYQLPDSLRGWRRE
LMGQALLDSLVTAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggtcggttttgcgccgag
tggcagcaactgccattcgttgccctcgataccgaattcatgcgggtcgacaccttctac
ccgatcgcaggcctgctgcaggtcggcgatggcgaacgtgcctacctgattgatccgctg
accatcgacaactggcagcctctggccgcgttgctggaaaatccggccgtgctcaaggtt
gtccacgcgtgcagcgaagacctcgaagtcctgctacgcctgaccggtagcctgccggcg
ccactgttcgatacgcaattggcggccgcttacctgaacctcggtttctccatgggttat
tcgcgcctggtgcaggaagtgctcggcatcgacctgcccaagggtgaaacccgttccgac
tggctgcaacgtccgctctccgaaacccagatcagctatgccgccgaagacgccgtgcac
ctggccgaagtcttcgtaaagctgcgtccaaagctgtctgacgagaaatacgcctgggtc
ctggaagacggtgccgaactggtggccaacctgcgccgcgagatcgatccgtacgaggtc
tatcgcgatgccaagctggcctggaagctgtcccgcgcccaactcgtggtattgcgcgag
ctttgtgcctggcgcgaaaaggaagcccgtgcccgcgacctgccgcgcaaccggatcatc
cgcgagcattcgttgtggccgctggcgcgtacgcaaccggataatctcggcgccctggcg
aaaatcgaagacatgcacccgcgtaccgtgcgtcaggatggtgagtttctgcttgatctg
atcaagcgctctggcagtgtgtcgccagatcaatggccgccatccgtgccggagccgctg
ccggtggacgctgccgtgttactcaagcagctcaaagccatcggccaggccgaggccgag
cgcctgaacattgcgccggaactgatgctgcgcaagaaaaccctggaagcgctgctcaag
agcggcttccccaatggtccctaccaattgcctgattcgctgcgtggctggcgccgcgaa
ttgatgggccaggcgctgctggacagcctggtcaccgccggagaacagccttga
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