Pseudomonas sp. UW4: PputUW4_01437
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Entry
PputUW4_01437 CDS
T02357
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputUW4_01437 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuu03019
]
PputUW4_01437 (deaD)
03009 Ribosome biogenesis [BR:
ppuu03009
]
PputUW4_01437 (deaD)
Enzymes [BR:
ppuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PputUW4_01437 (deaD)
Messenger RNA biogenesis [BR:
ppuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PputUW4_01437 (deaD)
Ribosome biogenesis [BR:
ppuu03009
]
Prokaryotic type
rRNA helicases
PputUW4_01437 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AFY18643
LinkDB
All DBs
Position
1669980..1671653
Genome browser
AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVAEAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERSGDRPERGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatccaaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatt
ctcgccggtcacgatatgattggtcaggcgcaaaccggtaccggtaaaaccgctgccttt
gccctgccaattctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaactcgtgagttggcgctacaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtgactgttgtggctgtctacggcggcgcgccgatgggcccacaactgaaa
gcaatccgtaatggcgcacaaatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtactggcgaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggacgacctggaagtcatcttcaaggccatgccggaaacc
cgtcagaccgtactgttctcggcaaccctgcctcagtcgatccgtgcaatcgccgaacgc
cacctgcgcgatccgaagcacgtcaagattcagagcaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacttcggccgttctcagcttgctg
gaagtggaagatttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gccaccgacgttgccgctcgtggcctggacgttccgcgcattactcacgtgttcaacgtt
gacatgccgtacgatccggagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaggttgctgaagttcgcctgccggacgctcaagccgttctg
gatgcgcgcatcaagaaactgaccaacagcctgtcgccgctggtggccgaggccgaatcg
actcacggtgatctgctcgatcgcctgaccgccgacatcggttgcagcccgcgtgccctg
gccgcagccctgttgcgcaaggcaaccaacggtcaagcgttgaacctggccgctatcgag
aaagagcgtccactggtgccgaacaatgcaccgcgtggcgatcgtccagagcgttccggt
gatcgtcctgagcgtggcgaccgcgagcgtcgtgctccgatgccgctgggcgaaggccgt
gcacgttgccgtaccgcgctgggcgcgcgtgatggtatcgctgccaagaacctgctgggc
gccatcctcaacgaaggtggtctggcgcgtgaagcgatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgaactgccggaagatggtctggagaagttgctgaccaagctgaag
gacactcgcgttgccggcaagcagttgaagctgcgtcgctaccgcgaagattga
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integrated database retrieval system
