Pseudomonas sp. UW4: PputUW4_02396
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Entry
PputUW4_02396 CDS
T02357
Name
(GenBank) DNA topoisomerase, type I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppuu
Pseudomonas sp. UW4
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppuu03032
]
PputUW4_02396
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_02396
Enzymes [BR:
ppuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PputUW4_02396
DNA replication proteins [BR:
ppuu03032
]
Prokaryotic type
DNA Topoisomerases
PputUW4_02396
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PputUW4_02396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AFY19594
LinkDB
All DBs
Position
complement(2804232..2805257)
Genome browser
AA seq
341 aa
AA seq
DB search
MPDALPPDLHYVDDTQPGITRRKLRGRFAYFNPAGQRITDPEAIKRLNALAVPPAYTQVW
ICADPCGHLQATGRDARGRKQYRYHPRWREVRDADKYLRLREFGLALPKLRQRLEAELAA
PGFSRDKVMATVITLLDTTLIRIGNSQYARDNRSYGLTTLRSRHVEINGSAILFQFRGKS
GVEHQITVKDRRLARIIKRCQDIPGQNLFQYLDENGDRHTVSSSDINSYLQTLTGADFTA
KDYRTWAGSVLALAMLRKLQWEPETDARRHLVEMVKNVARQLGNTPAVCRKCYIHPAVLD
GFLLGDLAQLPRTRARKGLSAEEVGLANFLERIPAAPEPTS
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgcactgccacctgacctgcattatgtcgatgacactcagccgggcatcacc
cgcaggaaactgcgcggaagattcgcctatttcaacccggcgggccagcgcatcaccgac
ccggaggcgatcaaacgcctcaacgcactcgcggtgccacccgcctatacccaggtgtgg
atctgcgccgatccatgcgggcacctgcaggccaccgggcgggatgcccggggtcgcaaa
caataccgttatcatccgcgctggcgggaggtgcgcgacgccgacaaatacttgcgcctg
cgtgagttcgggctggccttgccgaaactgcgtcagcgactggaagccgaattggccgca
ccgggattcagtcgcgacaaagtcatggccacggtcatcaccctgctggacacgacgttg
atccgtatcggcaacagccaatatgcccgggacaaccgctcctacggcctgacgaccttg
cgcagccgccatgtggagatcaacggcagtgccatcctgttccagttccgcggtaaaagt
ggcgtcgagcaccagatcaccgtgaaagaccgaagactggcgcggatcatcaaacgctgc
caggacattcccgggcagaacctgtttcagtatctggatgaaaacggagaccggcacacc
gtcagttcatccgacatcaacagctatttgcaaaccctcaccggcgccgatttcaccgcc
aaggattaccgcacctgggccggcagcgtcctggctctggcgatgttgcgcaaactgcag
tgggagcctgaaacagacgccaggcggcacctggtggaaatggtcaagaatgttgccagg
cagctcggcaataccccggcggtgtgccgcaaatgctatatccaccccgcggtgctggac
ggtttccttctcggtgacctggcgcaactgccaagaaccagggcgcgcaaggggctatcg
gccgaggaggtcgggctggcgaacttccttgagagaattcccgccgcgcctgaaccgacg
agttga
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