Pseudomonas sp. UW4: PputUW4_02850
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Entry
PputUW4_02850 CDS
T02357
Name
(GenBank) nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
ppuu
Pseudomonas sp. UW4
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_02850
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PputUW4_02850
Archaeal homologous recombinant proteins
PputUW4_02850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
AFY20045
UniProt:
K9NLG3
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All DBs
Position
3349059..3350303
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AA seq
414 aa
AA seq
DB search
MRLFHTSDWHLGQNLHGQDRDFEHGCFLDWLLRQLKLDQPDVLLIAGDIFDTVNPPVKAQ
ERLYDFIVSAHEQQPSLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDA
ERLLLPLPDASGEVTAWCLALPFLRPAEVTGAHLGDNYLRGIGQVHEWLIEAANAKRTAG
QALIAISHAHMAGGSVSEDSERSLIIGNAEALPASLFGPSISYVALGHLHKPQKVNGEER
IRYSGSPIPLSFSEISYQHQILDIRLDGETLVSVEPKLIPRAVNLQRIGPAPLSEILLQL
ADLPDIDLLADIQRQPWLEVRVRLDEPQPDLRNQVETALQGKAVRLVRIAAEYAGNGSRD
GADEGSTLIELDQLTPQELFSRAWQDNYGSEVDEQTLKDFAELLQDVQMESEQP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcttgtttcacacctccgactggcacctggggcaaaacctgcacggccaggatcgc
gatttcgaacatggctgttttcttgactggctgttgcgccagctgaaactggatcagccg
gatgtgctgttgatcgccggcgatatcttcgacacggtcaacccgccggtcaaagcccag
gagcggctctacgacttcatcgtcagcgcccacgagcagcagccgtcgctgaccatcgtg
atgattgccggcaaccacgattccggctcgcggatcgaactgcccgcgcccttgatgcgc
cgcttgcgcacccatgcgctcggtcgtgtgctgtggctggatgacgggcagctggatgcc
gagcgcctgttgttaccgttgcctgacgccagtggtgaagtcaccgcctggtgcctggca
ctgccgttcctgcgcccggcggaagtcaccggcgcgcacttgggcgacaactatctgcgc
gggatcggccaggtgcacgaatggctgatcgaagcggccaacgccaagcgcaccgcaggc
caggcactgatcgccatcagccacgcacacatggcgggcggctcggtgtcggaagactcc
gagcgcagcctgatcatcggcaacgccgaagccctgcccgccagcctgttcgggccgagc
atcagttacgttgccctgggtcacctgcacaaaccgcagaaggtcaacggcgaggagcgc
atccgctacagcggctcgccgattccgctgtcgttctccgagatcagctatcagcaccag
attctcgacatcaggctcgacggcgaaaccctggtcagcgtcgagccgaaactgattccc
cgcgctgtcaacctgcaacgcatcggcccggcgccattgagcgagatcctgctgcagctg
gcggacctgccggacatcgacctgttggccgacatccagcgccaaccgtggctggaggtg
cgggtgcgcctcgatgagccgcagcccgacctgcgcaatcaagtggaaaccgccctgcaa
ggcaaggccgtgcgcctggtgcgcatcgccgccgagtacgccggcaacggcagccgtgac
ggtgccgatgagggcagcacgctgatcgaactggaccagctcacgccccaggagctgttc
agccgcgcctggcaggacaactacggcagcgaggtcgacgagcaaaccctcaaggacttt
gccgagctgttgcaagacgtgcagatggagagcgaacagccatga
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