Pseudomonas sp. UW4: PputUW4_02896
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Entry
PputUW4_02896 CDS
T02357
Name
(GenBank) ECF subfamily RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PputUW4_02896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppuu03021
]
PputUW4_02896
Transcription machinery [BR:
ppuu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PputUW4_02896
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
NirdL-like_HTH
DUF6362
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AFY20091
LinkDB
All DBs
Position
3403065..3403619
Genome browser
AA seq
184 aa
AA seq
DB search
MRIAHGHVLTMTVADSSCVQNLYASHHHWLHELLRRRLNNAFDAADLAHDTFIRVLKRPQ
VFDGETHERSYLATIARGLCIDHWRRRQLEQAWLETLAAQPQAVQPSPEQRAIIVETLYE
VDAMLQRLPQRVRDAFVLAQVHGLPYRNIAEEIGVSERMVKKYLAQALMHCAMLEAELDG
LLIQ
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
gtgcggatcgcccatggacatgtgctcacgatgacggttgccgactcctcctgcgtccag
aacctctacgccagccaccaccactggttgcacgagttgctgcgccgacgcttgaacaat
gcgttcgatgccgccgacctggcccatgacaccttcattcgggtgctcaagcgtccgcag
gtgtttgacggggaaacccacgaacgctcttatctggcgaccatcgcccgaggcctgtgc
attgaccactggcgtcgtcgccagctggaacaggcctggctcgagaccctggccgcgcag
ccccaggccgtccagccttcgccggagcagcgggcgatcatcgtcgaaaccctgtacgaa
gtggatgccatgctgcagcgcttgccccagcgggtgcgtgatgcgttcgttctggcgcag
gtgcatgggctgccctaccgaaacattgccgaagaaatcggcgtgagcgagcgcatggtg
aaaaagtacctggcccaggcgctgatgcattgcgcaatgctcgaagccgaactcgacggc
ctgctgattcaatga
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