Pseudomonas sp. UW4: PputUW4_03468
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Entry
PputUW4_03468 CDS
T02357
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PputUW4_03468 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_03468 (uvrB)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PputUW4_03468 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PputUW4_03468 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
UB2H
Motif
Other DBs
NCBI-ProteinID:
AFY20661
LinkDB
All DBs
Position
complement(4033114..4035129)
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFEPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLADLQY
TRNDMEFARATFRVRGDVIDIHPAESDFEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLGAVEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGREAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWESISPQTIFVSATPGNYEAEHAGRVIDMVVRPTGLVDPQ
IEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNMANGITPKGVFKDVADIMEGATV
PGSRSKKRKGMAKAAEENARYEAELRSPGEIAKRIKALEEKMYALARDLEFEAAAQMRDE
IGKLRERLITV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattccagctagtcacccgtttcgagcccgccggcgatcagccggaagccatc
cgcctgatggtcgagggcatcgaggccgggctggcgcaccagacgctgctcggtgtgacc
ggctcgggcaagaccttcagcatcgccaatgtgatcgcccaggtgcagcgcccgacgctg
gtgctggcgccgaacaagaccctggcggcgcagttgtacggcgagttcaaggcgttcttc
ccgaacaacgcggtggagtatttcgtttcctactacgactactaccaacctgaagcctac
gtgccgtcctcggacaccttcatcgagaaagatgcctcgatcaacgaccacatcgagcag
atgcgattgtcggcgaccaaggcattgctcgagcgcaaggacgcgatcatcgtcaccacg
gtgtcgtgcatctacggcctgggcagcccggaaacctatttgaagatggtgttgcacgtg
gatcgcggcgacaagctcgaccagcgtgagttgctgcgccgcctggccgacctgcaatac
acccgcaatgacatggaattcgcccgggcgaccttccgcgtgcgcggcgatgtgatcgat
atccatccggcggaatcggatttcgaagcaatccgcatcgaactcttcgacgatgaagtg
gaaagcctgtcggccttcgatccattgaccggcgaagtgatccgcaagctgccgcgcttc
accttctacccgaagagccactacgtcacgccccgggaaaccctgttgggcgcggtcgaa
ggcatcaaggtcgagttgcaggagcgcctggaatacctgcgctccaacaacaaactggtg
gaagcccagcgactggagcagcgcacccgtttcgatctggagatgatcctcgaactgggt
tactgcaacggcatcgaaaactactcccgttacctgtccggtcgcgaagccggcgcgccg
ccaccaaccctttacgattacctgccggccgacgccttgctggtgatcgacgaatcccac
gtcagcgttccgcaggtgggcgccatgtacaagggcgaccgctcgcgcaaggaaaccctg
gtcgaatacggtttccgcctgccctcggccctggacaaccggccgatgcgtttcgatgaa
tgggaaagcatcagcccgcagacgattttcgtttcggcgacgccgggcaactatgaagcc
gagcacgccgggcgcgtgattgacatggtagtgcgcccgaccgggctggtggacccgcaa
atcgagatccgcccggcactgacccaggtcgacgacttgctgtcggaaatcaccaagcgt
gtcgctctggaagagcgggtgctggtcacgacgctgaccaagcgcatggccgaagacttg
accgactatctggccgaccacggcgtgcgcgtgcgctacctgcactcggacatcgacacc
gtggagcgggtcgaaatcatccgcgacctgcgcctcggcaccttcgatgtgctggtgggc
atcaacctgttgcgcgaaggcctggacatgccggaagtgtcgctggtggcgatcctcgat
gccgacaaggaaggcttcctgcgttccgagcgctcgctgatccagaccatcgggcgggcg
gcgcgtaacctcaatggccgggcgattctgtatgccgaccgcatcacgggctccatggag
cgggcgatcggcgaaaccgagcgtcgtcgcgacaagcagattgcctttaacatggccaat
ggcatcacgcccaaaggcgtgttcaaggacgtcgccgacattatggaaggcgccacagtg
ccgggttcgcgcagcaagaagcgcaagggcatggccaaggccgccgaagagaacgccagg
tacgaagccgaattgcgctcgccgggcgagatcgccaagcgtatcaaggccctggaagag
aagatgtatgcattggcgcgtgatctggagtttgaagcagcggcgcagatgcgcgacgag
attggcaagttgcgcgagcggttgatcactgtttga
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integrated database retrieval system
