Pseudomonas sp. UW4: PputUW4_03944
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Entry
PputUW4_03944 CDS
T02357
Symbol
recQ2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputUW4_03944 (recQ2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuu03019
]
PputUW4_03944 (recQ2)
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_03944 (recQ2)
Enzymes [BR:
ppuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PputUW4_03944 (recQ2)
Messenger RNA biogenesis [BR:
ppuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PputUW4_03944 (recQ2)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PputUW4_03944 (recQ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
HTH_23
Sigma70_r4_2
GerE
PAX
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AFY21136
LinkDB
All DBs
Position
complement(4540361..4542487)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPERLVQ
PRMLSFLQGLNISLFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFPDVPRIALTATADKRT
REEIVTRLHLQDAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VEEVAAFLSEQGFPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDNEKVRNIGHQHLSVFGVGKAMTEGEWRSLFRQLVARGLADIDLE
GYGGLRLSDSCRPLLKGEVTLELRRDLKAQTVAKSSKSQASQLVRGEEREQWEALRALRR
KLAEEHGVPPYVIFPDSTLLEMLRSQPTSLAQMATVSGVGARKLERYGEAFLEVLGGQVE
APKPVADVRHELITLARAGMTPVQIAGQLQCSEKNVYAMLAEAIGKQQLSLEQALDLPED
LMGEVQDAFLDGEGELPPVSEIAALFAGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggc
cgccagggtgcaatcattgagcgcgtggccagcggtggcgatgccctggtactgatgcct
accggtggcggcaagtcattgtgtttccaggtcccggcgttgctgcgcgaaggcctggcc
gtggtagtttcgccgctgatcgccctgatggacgaccaggtcgccaccctggaagagctg
ggtgtggccgccgccgcgttgaactccaccctcagcgccgagcagcagcgcgacctcgcc
gcccgcatccgccgcggtgaagtgaaaatgctctatctggcgccggagcgtctggtccag
ccgcgcatgctgtcatttctgcagggactgaacatttccctgttcgccatcgacgaagcc
cactgcgtatcgcaatgggggcatgacttccgtccggaataccttcaactgggccagttg
gcggaaatgttccccgacgtgccgcgcatcgccctgaccgccacggccgacaagcgcacc
cgggaagaaatcgtcacccggctgcacctgcaagacgccgagcgcttcctgtcgagcttc
gaccgaccgaacatcttttatcgcatcgtgcccaaggagcagccgcgcaagcagttgctg
gcgttcctttccgagcgccgcagcgatgccggcatcgtgtattgcctgtcgcgcaagaaa
gtcgaggaagtcgccgccttcctcagcgaacagggcttcccggcgctgccgtaccacgcc
ggtctgcccaacgatttgcgggcttaccatcagaagcgcttcctcaacgaagaaggcctg
atcatggttgccaccgtggcgttcggcatgggcatcgacaagcccaacgtgcgttttgtc
gcgcatctcgatttgccgaaatccctggaggcctactaccaggaaaccggccgtggcggc
cgtgatggcctgccagcagacgcctggatggcctacggcctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgaaggcgacgagcgccacaaacgcctggagcagcataag
ctcgacgccatgctctcgctctgtgaagaaacccgctgccgtcgacaaacgctgctggcc
tacttcgacgaggacatgccccagccttgcggtcattgcgacaactgcgtcgacggcgtg
cagacctgggatgccaccgagcccgcgcggcaggcgctttcggcgatctaccgcaccggt
caacgctacggtgtcggacacctggtggatgtattgctgggcaaggacaacgaaaaggtc
cgaaacatcggccatcagcatctttcggtgtttggcgttggcaaggcgatgacagagggc
gagtggcgctcgttgttccgccaactggtggcccgtggtctggccgacatcgacctcgaa
ggctacggtggcctgcgcctgagcgacagttgccggccgctgctcaaaggcgaggtgacc
ctggagttgcgccgcgacctcaaggcgcaaaccgtggcgaaaagcagcaagagccaggcg
agccaactggtccgtggcgaggagcgcgaacagtgggaagccctgcgtgccctgcggcgc
aagctcgccgaagaacatggcgtgccgccgtatgtcatcttccccgactcgaccttgctg
gagatgctgcgcagccagccgacctcgctggcgcaaatggccacggtcagcggtgtcggc
gcgcgcaagctggagcgttacggcgaggccttcctcgaagtactcggtggccaggtcgag
gcaccgaaaccggtggccgacgtacgtcacgaactgatcacgctggcgcgagccggtatg
acacccgtgcagatcgccggtcagttgcagtgctcggaaaagaacgtctacgccatgctg
gccgaagcgatcggcaagcagcagttgtcgctggagcaggcgctggatctgcctgaagac
ctgatgggcgaagtccaggacgccttcctcgacggcgagggcgaattgccgccggtttcc
gagatcgccgcgctgttcgcgggccgggtaccggaaggggttttgtactgtgttcgcgct
gccttgcagtcggaattcgagatttga
DBGET
integrated database retrieval system
