Pseudomonas sp. UW4: PputUW4_03974
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Entry
PputUW4_03974 CDS
T02357
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ppuu
Pseudomonas sp. UW4
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppuu03009
]
PputUW4_03974 (srmB)
Enzymes [BR:
ppuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PputUW4_03974 (srmB)
Ribosome biogenesis [BR:
ppuu03009
]
Prokaryotic type
rRNA helicases
PputUW4_03974 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Microtub_bd
AAA_19
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
AFY21166
LinkDB
All DBs
Position
complement(4580018..4581358)
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AA seq
446 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTM
LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKTAAKTPTKRKSANR
PKSDSLVSKDGMAPLKRRKPEAPAAE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagctgaaattt
gtcgagccaacgcctgtgcaagccgcggccattccgctggcgctccaagggcgtgacctg
cgggtgacggcgcaaaccggtagcggcaaaaccgccgcattcgttttgcccatcctcaac
cgtctgatcggcccggcgaaaatccgcgtcagcatcaagaccctgatcctgctgccgacc
cgcgaactggcccagcagacgctgaaggaagttgaacgcttctcgcagttcaccttcatc
aagtccggactgatcaccggcggcgaagacttcaaggtccaggccgcgatgctgcgcaag
gtgccggacatcctgatcggtacgccgggccggatgatcgagcaacttaacgccggtaac
ctcgacctcaaggaagtcgaagtactggtgctcgacgaagccgaccgcatgctcgacatg
ggcttcgccgaagacgtgcagcgtctggtggacgaatgtaccaaccgtcagcagaccatg
ctgttctccgctaccaccggtggctcgggcctgcgcgagatgatcgccaaggtcctgaac
aaccctgagcacctgcagctcaacgcggtcagccagctgaacgacaccactcgccagcag
atcatcaccgctgaccacaaccagcacaaagaacagatcgtcaactggctgctggccaac
gagacctaccagaaagccatcgtcttcaccaacacccgggccatggccgaccgtatctac
ggccgcctggtggcgcaggaatacaaagcgttcgtgctgcacggcgagaaagaccagaag
gatcgcaaactggcgatcgaccgcctgaagcagggcggcgtgaaaatcctcgtggccacc
gacgtcgccgctcgcggcctggacgttgacggcctggacctggtgatcaacttcgacatg
ccgcgcagtggcgacgagtatgtgcaccgtatcggtcgtaccggccgcgccggtaacgat
ggcctggccatctcgctgatctgccacggcgactggaacctgatgtcgagcatcgagcgc
tacctcaagcagagcttcgagcgccgcaccatcaaggaagtcaaaggcacctacggcgga
ccgaagaaggtcaaggcctcgggcaaggccgtcggcgtgaagaagaaaaagaccgacgcc
aagggcgacaagaagaaaactgccgccaagaccccgaccaagcgcaagagcgccaaccga
ccgaagagcgactccctggtcagcaaggacggcatggcgccgctcaagcgccgcaagccg
gaagcgccagcggctgagtaa
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integrated database retrieval system
