Pseudomonas sp. UW4: PputUW4_03988
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Entry
PputUW4_03988 CDS
T02357
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppuu
Pseudomonas sp. UW4
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuu03019
]
PputUW4_03988 (hrpA)
Enzymes [BR:
ppuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PputUW4_03988 (hrpA)
Messenger RNA biogenesis [BR:
ppuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PputUW4_03988 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
T2SSE
NACHT
ABC_tran
AAA_30
SLFN-g3_helicase
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AFY21180
LinkDB
All DBs
Position
complement(4596205..4600116)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLGQWVARMQASCDQVLARR
ASLPVIRYDDSLPIAAKRDEIKKALEKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEVSAFPFIEPPDGKAISDGYNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPKLHKAVLVGLLSQIGQKTEEGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLTANKQLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE
ASEVTAQHYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPMLPPERLDWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRMTFAEGSLPQALGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
PKVFAAVAEKTQQKIAGLSMTVYPALVEEAGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AESAKFLRGKLPGLTELGLLYRDMGRVDALVEDILLASLDSCILEGEDPLPRDGAGLASL
AERKRGAWTEHAERVAKLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPMQWLKELPRYLKAIEQRFEKIAAQVQRDRVWSGELSGLWTQYQTRASKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWSQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccctccatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccggctgcggcggcagttgcttgagctgcgcaagaaacccgatgaggcc
aaactgggccagtgggtggcgcgcatgcaggcgtcctgtgaccaggtgctggcgcgccgc
gccagcctgccggtgattcgttacgacgacagtttgccgattgccgccaagcgcgacgaa
atcaagaaggcgctggaaaagcatcaggtgctgatcatcgccggcgagaccggctcgggt
aaaaccacccagttaccgaagatctgcctggaaatcggtcgcggccagcatggcttgatc
ggtcacacccagccacggcggatcgccgcgcgcagcgtggccagccgggtcgccgaagag
ctgggcacgccgttgggcgcactggtcggctatcaggtgcgcttcgaggaccagagcgat
tccaataccctgatcaaactgatgaccgacggcatcctgctggcggaaacccagaacgac
cgctatctggaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctcaac
atcgacttccttctcggctacctgaaaaccctgctgccgcgccgtcccgacctgaaggtc
atcatcacctcggcgaccatcgaccttgagcgtttctccaagcatttcgacgatgctccg
attgtcgaggtgtccggccgtacgttcccggtggacacctggtatcgcccgctgaccctg
gagcaggacgaagagggtaaccgcgtcgaggacgacctgacggtggatcaggcgattctc
gccaccctcgacgaaatcgccgcttatgagcgcagtgaacgccgcagtcccggtgacgtg
ctggtgttcctgcccggtgagcgcgagattcgcgacgccgccgacatgctgcgcaaggcc
cagctcaagcacaccgaaatcctgccgttgtacgcgcgcctgtcgccggccgagcagcag
cggattttccagtcgcacccggggcgtcgcgtggtgctggcgaccaacgtcgcggaaacc
tcgctgacggtgccgggcatccgctacgtgatcgacagcggcaccgcgcgcatcagccgc
tacagctaccgggccaaggtccagcgcctgccgatcgaagccgtttcccaggccagcgcc
aaccagcgcaagggccgttgtggacgggtcgagccgggtatttgcgtgcgcctgtacagc
gaagaggatttcctcggtcgcccggaattcaccgatccggaaatcctgcggaccaacctc
gcggcggtcattttgcagatgttgcacctgcgccttggcgaggtcagcgcgttcccgttc
atcgaaccgccggatggcaaggccatcagcgacggttacaacctgctgcaggaactctcg
gcagtggatcgcaacagccagttgaccccgctcggtcgccaattggcgcggctgccggtg
gacccgcgcatggggcgcatgttgctggaggcggcgaagctcggcagtttgcaggaagtg
ctgatcgtcgccagcgccatgtcgatccaggacccgcgcgaacgtccgccggagcgtcag
caagcggcggatcaggcccacgcccagtggaaagacgccgactcggacttcgccggtctg
gtcaacctgtggcgcggattcgaagagcaacgccaggcgctgaccgccaacccgctgcgc
aactggtgccgcaagaatttcctgaattacctgcgcctgcgcgaatggcgcgactcccat
cgccagttgagtctgatctgccgcgacatgcagctgagcctcaataaagagccggcggat
tacccgaaactgcacaaagcggtgctggtgggtttgctcagccagatcggccagaaaacc
gaagagggcgattacctcggcgcgcgtcagcggcggttctggattcatccgtcgtcgggt
atcggcaagaagcgtccgcagtggctgatgaccgccgaactggtggaaaccaccaagctc
tacgcgcgcatggtggcgaagatcgacgccgactggatcgaaccgctcgccgggcacctg
atcaagaaaaaccacttcgaaccgcactgggagaagaagcgcggccaggtggttgcgttc
gagcagatcaccctgttcgggttgatcgtggtagggcggcggccggtgcattacggcccg
gtggatccggtggtttcgcgcgaattgtttatccgcgaagcgctggtgcgcggtgagatt
cagtccaaagccaagtgtttgaccgccaacaagcagttgctggaacaactcgacgaactg
gaggccaaggcccgccgtcgcgacatcctggcggatgaagaaaccctgtacgccttctac
gacgcgcgcctgccggcggagatccatcagacagcgaccttcgacagctggtaccggatc
aacagtcagaaagatccgcagctgttgatcatgcgcgaagaagacgtgctggcccgtgaa
gccagtgaggtcaccgcacagcattacccggatacgctgcacatcggtgatctggagttg
gccctcagctaccacttcgagccgaatcatccacgggacggcgtgaccctgcgcgtgccg
gcaccgctgttgccgatgctgccaccggagcgcctggactggctggtgccgggtgtcatc
gaagccaagtgcattgccctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtg
ccggtgccggacttcgtcaaggctgccttgcagcgcatgacctttgccgagggctcgctg
ccccaggccctgggtcgcgagttgctgcgcatgaccggagcgcgggtcagcgatgaagcc
tgggccgaggcggcacagcaagtcgaaagccatctgcggatgaacctggagatcgtcgac
ggccagggcaagttcctcggtgaggggcgcgatctggccgaactgacggcgcgtttcgcc
gaggccagccaggccgcgttggcggtgccgcaaaccgcgaagagccagcaaccggttgag
ccgaaagtcttcgccgccgtggccgagaaaacccagcagaagatcgccggactgtcgatg
acggtttatccggcactggtggaagaggcgggcacggtcaaggaagggcgtttctcgacc
ccggccgaggccgagttccagcatcgccgtgccctgcaacgcttgctgatgcagcaactg
gccgagtcggcaaagttcctgcgcggcaagttgccgggcctgaccgagctgggcctgctg
taccgcgacatggggcgtgtcgatgcgctggtggaagacattctgctggccagcctcgac
agttgcattctcgaaggcgaagacccgctgccacgcgatggcgccggattggcgtccctg
gccgaacgcaagcgtggcgcctggaccgagcacgccgagcgtgtggcgaagctgaccctg
gaaatcctcaagctctggcatggcctgcaaaaacgcttcaagggcaagatcgacctggca
caggccgtggccctgaacgacatcaagcagcaactcagccacctggtctatccggggttt
gtccgggaaacaccgatgcagtggctcaaggagttgccgcgttacctcaaggccattgag
cagcgtttcgaaaaaatcgctgcccaggtgcagcgcgaccgggtctggagcggcgaattg
agcggcctgtggacgcaataccagactcgcgccagcaaacatgcccaggaaggcaagcgc
gatccgcagctggagttgtatcgctggtggctggaggaataccgggtttcgctgtttgcg
caacaactgggaaccaaggtgccgatctccgacaagcgcctgaacaagcagtggagccag
gtcgaaccctag
DBGET
integrated database retrieval system
