Pseudomonas sp. UW4: PputUW4_04420
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Entry
PputUW4_04420 CDS
T02357
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03410
Base excision repair
ppuu03430
Mismatch repair
ppuu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PputUW4_04420 (recJ)
03430 Mismatch repair
PputUW4_04420 (recJ)
03440 Homologous recombination
PputUW4_04420 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_04420 (recJ)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PputUW4_04420 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PputUW4_04420 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PputUW4_04420 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFY21612
LinkDB
All DBs
Position
complement(5073354..5075063)
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AA seq
569 aa
AA seq
DB search
MRIEPRLLPDTLPFLGDIPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIDAAVDLL
VTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFDYGYGLTPEIVAV
ALERQPHLLITVDNGISSVEGVAAAKKAGLKVLVTDHHLPGEELPLADAIVNPNQPGCEF
PSKALAGVGVIFYVLMALRARLRELGWYASKPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGIKAILEVAKRDHARITSTDLGFIVGPRLNAAGRLDDMSLGIEC
LLTEDAGLAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDPEWHQG
VIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPNLITKYGG
HAMAAGLTLPEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGIDRDIWPNPTIK
WVELAYKLDLNEFRGNETVQLMIAHIEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattgaacctcgcctgctgcccgacaccctgccattcctcggtgatattccgcca
ctgctgacccgcctgtatgcggcgcgaggtgtgcaatccgaggcggaactggacaagagc
ctggcgcgactgattccgttccagcagctcaagggcattgatgccgccgtggatttattg
gtgacggcgctcgaacagcgccagcgcatcctgatcgtcggcgacttcgatgccgacggc
gcgacggccagtaccgtgggcaccctgggtttgcgcctgttgggtgcggcacatgtcgat
tatctggtgccgaaccgtttcgactacggctacggcctgaccccggagattgtcgcggtc
gcgctggagcgccagccgcatttgctgattaccgtggataacggcatctccagcgtcgaa
ggcgtggctgcggcgaaaaaggccgggctcaaggtgctcgtcaccgaccaccacttgccc
ggtgaggagctgccgttggccgatgccatcgtcaatccgaaccagccaggttgcgagttt
ccgagcaaggccctggccggcgtcggggtgattttctatgtgttgatggccctgcgtgcg
cgtttgcgcgagctcggctggtacgccagcaagccgcagccgaatatcggcgaattgctc
gatctggtggccttgggcagcgtggccgacgtggtgccgctggatgccaacaaccggatt
ctggtgcatcagggcctcgagcggattcgtgccggacgtgcccggcccgggatcaaggcg
atcctcgaggtggccaagcgtgaccatgcgcgcatcacctccaccgacctgggttttatc
gtcggcccacgcctgaacgccgcagggcgcctggatgacatgagcctgggcatcgaatgc
ctgttgaccgaagacgcaggtctggcccgtgagatggcggctcaactggacggcatgaac
caggatcgcaaatccatcgagcagggcatgcagcgcgaagcgctggcccagctcaaggat
ctgccggtggagtcgatgccgttcggcttgtgcctgttcgatcccgagtggcatcagggc
gtcatcggtatcctcgcatcacggatgaaagagcgttatttccgcccgaccatcgccttt
gccgatgccggtgacggcctgctcaaggggtctgggcgttcggtccagggctttcacatc
cgcgacgccctgagtgtggtggcggcgcagcatccgaatctgattaccaagtatggtggc
cacgcaatggcggccggcctgacgttgccggaagcgaacttccccctgttcgccgaggcc
tttgacgctgaagtgcgccggcaactgcgcgaagaggatctgactggccgcttgttgtcg
gacggcaccctggcagtggaggagtttcacctggaactggctcgcgccctgcggcatgcc
ggcccttgggggcagcacttcccggaaccgttgtttcatggggtgttccagttggtcgag
cagcgcgtggtgggcgaacggcatctcaaagtggtgctcaaaagtgaatgtggttcggtg
aagctcgacggtattgccttcgggatcgaccgcgacatctggccgaatccgaccatcaag
tgggtggaactggcctacaagctcgacctcaacgagtttcgtggcaacgaaacggttcaa
ctgatgattgcccacatcgaaccgcgttga
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