Pseudomonas sp. UW4: PputUW4_04737
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Entry
PputUW4_04737 CDS
T02357
Name
(GenBank) exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03030
DNA replication
ppuu03430
Mismatch repair
ppuu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PputUW4_04737
03430 Mismatch repair
PputUW4_04737
03440 Homologous recombination
PputUW4_04737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppuu03032
]
PputUW4_04737
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_04737
Enzymes [BR:
ppuu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PputUW4_04737
DNA replication proteins [BR:
ppuu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PputUW4_04737
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PputUW4_04737
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DUF8678
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AFY21927
LinkDB
All DBs
Position
complement(5423762..5424367)
Genome browser
AA seq
201 aa
AA seq
DB search
MERIAVIDFETTGISPSSSCRATEIAVVILEQGRIVERYQSLMNAGVRVPAFIEQLTGIS
NAMLRTAPSAEQVMNEVNEFVGTTPLLAHNAAFDQKFWDFELGRIKRTRLQNFACSLLLA
RRLMPGAPNHKLGTLTTFANLPHTGKAHRAMADAEMAANLTAHLEEELLQKHGLRELSHD
LLCKLQKVPAAKVGEHLKRYR
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
ttggaacgcatcgcagtcatcgactttgaaaccaccgggatctccccgagcagcagctgc
cgggccacggaaattgccgtggtgatccttgaacagggacgcatcgtcgagcgttaccaa
agcctgatgaacgccggcgtgcgcgtcccggctttcatcgagcagcttaccggcatcagc
aacgccatgctgcgcaccgcgccgtcggcggagcaggtgatgaacgaagtgaatgagttc
gtcggcaccacacccttgctcgcgcataacgccgcgttcgaccagaagttctgggacttc
gaactcgggcgaatcaaacgcacccgcttgcagaactttgcctgttcgctgctcttggcc
cgccgcctgatgcctggcgcgccgaaccacaaactcggcaccctcaccacgtttgccaat
ttgccgcacaccggcaaggcccaccgggccatggccgatgccgagatggcggccaacctg
acggcgcacctggaggaagagttgctccagaagcatggcctgcgcgagctgtcccatgac
ttgctgtgcaagttgcagaaggtgccggcggcgaaggtgggtgaacatctcaagcgctat
cgctga
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