Pseudomonas sp. UW4: PputUW4_04772
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Entry
PputUW4_04772 CDS
T02357
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03030
DNA replication
ppuu03430
Mismatch repair
ppuu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PputUW4_04772 (holA)
03430 Mismatch repair
PputUW4_04772 (holA)
03440 Homologous recombination
PputUW4_04772 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppuu03032
]
PputUW4_04772 (holA)
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_04772 (holA)
Enzymes [BR:
ppuu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PputUW4_04772 (holA)
DNA replication proteins [BR:
ppuu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PputUW4_04772 (holA)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PputUW4_04772 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DNA_pol3_gamma3
CCCAP
Motif
Other DBs
NCBI-ProteinID:
AFY21962
LinkDB
All DBs
Position
5462852..5463889
Genome browser
AA seq
345 aa
AA seq
DB search
MKLAPAQLAKHLQGVLAPVYIISGDDPLLCQEAADAIRTAARQQGFDERQVFAADANFDW
GTLLQAGASMSLFAEKRLLELRLPSGKPGDKGAAALIEYCSRPADDTVLLISLPKLDGSA
QKTKWGKALVEGQQTQFVQIWPVDVAQLPSWIRQRLSQAGLSASQDAVELIAARVEGNLL
AAAQEIEKLKLMAEGGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGE
GVEPPVILWALARELRLLANISLQYSQGTPLDKAFSQAKPPVWDKRKPLMSKALQRYSAQ
RWAQLLLEAQRIDAQIKGQAAGSPWMSLSRLTLLMAGQRLTLPAE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgcccccgcccaactcgccaaacacctgcaaggcgtacttgcgcccgtctac
atcatcagcggcgatgacccgctgctgtgccaggaagcggccgacgccatccgcaccgct
gcccgtcagcagggattcgatgaacgccaggtatttgccgccgacgccaatttcgactgg
gggaccttgctgcaagccggtgccagcatgtcgttattcgccgaaaagcgcctgctggaa
ctgcgcctgccttccggcaaacccggcgacaaaggtgccgccgcgcttatcgagtattgc
tcgcgcccggcggacgacaccgtgctgctgatcagcttgccgaaactcgatggcagcgca
cagaaaaccaagtggggcaaagcgctggtcgaaggacagcagacccagttcgtgcagatc
tggccagtcgatgtcgcccagttacccagctggatccgccaacgtctgtcccaggccggg
ctatctgccagccaggacgctgttgagctgattgcagcacgggtcgagggcaacctgctg
gccgctgcccaggaaatcgaaaagctcaaactgatggccgaagggggtcagatcaccgtt
gaaacggtgcaggcggcggtggccgatagtgcgcgcttcgacgtctttggcctgaccgat
gcggtgctcaatggtgaagcggcccatgcgctgcgcatgctcgaaggcttgcgcggcgaa
ggcgtcgagccgccggtgattctctgggccctggcccgggagcttcgcctgctggccaat
atttccctgcaatacagccaggggacaccgctggacaaggccttcagccaagccaaaccg
ccagtctgggacaaacgtaaaccgctgatgagcaaagccctgcaacgctactcggcacaa
cgctgggcgcaactgctgctggaagcgcaacgcatcgacgcgcagatcaagggccaggcg
gcgggttcgccgtggatgagcttgagccggttgacgttgttgatggccggtcagcgtcta
accctgcctgccgagtaa
DBGET
integrated database retrieval system
