Pseudomonas sp. UW4: PputUW4_04994
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Entry
PputUW4_04994 CDS
T02357
Symbol
fecI5
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PputUW4_04994 (fecI5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppuu03021
]
PputUW4_04994 (fecI5)
Transcription machinery [BR:
ppuu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PputUW4_04994 (fecI5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
Sigma70_ECF
HTH_24
Sigma70_r3
HTH_17
MerR
HTH_29
HTH_31
FaeA
Peripla_BP_3
Motif
Other DBs
NCBI-ProteinID:
AFY22184
LinkDB
All DBs
Position
5703245..5703763
Genome browser
AA seq
172 aa
AA seq
DB search
MSSVPSPQSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGREELKEPREP
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEAEQPSAQEQQMILEDLKNIDRLLGKL
STKARAAFLYNRLDGLGHAEIAERLGVSVPRVRQYLAQGIRQCYIALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcagtcccaagccctcaaagtgaactcgtcggtgcgttgtatcgcgaccatcgc
ggttggctattggcctggcttcgacgcaatgtcgcctgcccacagcgggccgaagacctg
agccaggacacgttcgtgcgtttgctgggccgcgaggaactgaaggaaccacgcgaaccc
cgggcattcctggtggccatcgccaagggcctgctgttcgattatttccgtcgcgccgcg
ctggagcaggcttacctcaccgaactgatgctgattcccgaagccgaacaaccgtcggcg
caagagcagcagatgatcctcgaagacctgaaaaacatcgaccgtttgctcggcaagctt
tccaccaaggcccgggctgcgttcctctacaaccgtctcgacggtcttggccacgcagaa
atcgccgagcgcctgggggtatcggtgccgcgggtacgccagtacctggcccagggcatt
cgccagtgctatatcgcgctatatggtgagccgacatga
DBGET
integrated database retrieval system