Pseudomonas sp. UW4: PputUW4_05249
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Entry
PputUW4_05249 CDS
T02357
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputUW4_05249 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppuu03021
]
PputUW4_05249 (rho)
03019 Messenger RNA biogenesis [BR:
ppuu03019
]
PputUW4_05249 (rho)
Transcription machinery [BR:
ppuu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PputUW4_05249 (rho)
Messenger RNA biogenesis [BR:
ppuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PputUW4_05249 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
AFY22438
LinkDB
All DBs
Position
complement(5977241..5978500)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaaaagcggtgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgctccgctgacgcttcctatctcgccggtccagacgatatctac
gtctcgccgagccagatccgtcgtttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccaaaggaaggcgagcgttatttcgcgctgctcaaggtcgacacgatcaac
ttcgaccgtccggaaaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggttccaccgaagacctgaccggtcgt
gtcatcgacctgtgcgccccgatcggcaaaggccagcgcggtctgatcgttgctccgccg
aaagcgggcaagacgatcatgctgcagaacattgccgcgaacatcgcgcgtaacaaccct
gaagttcacctgatcgtgctgctgatcgatgaacgtccggaagaagtaaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacgttcgacgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggctcgtgcctacaacaccgtgatcccgagc
tccggcaaggtactgaccggtggtgtcgatgcccacgccctggaaaaaccgaaacgtttc
tttggcgccgcgcggaacatcgaagaaggcggctcgctgaccatcatcgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaggaattcaaaggcaccggcaac
atggagctgcctctggatcgccgcatcgctgaaaagcgcgtgttcccggccatcaacatc
aaccgttccggcacccgccgcgaagagttgctgaccgccgacgacgagctgcagcgcatg
tggatcttgcgcaagctgctgcatccgatggatgaagtggctgccatcgagttcctggtc
gacaagctgaaaacgaccaagaccaacgatgagttcttcctgtcgatgaaacgcaagtaa
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