Pseudomonas sp. UW4: PputUW4_05329
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Entry
PputUW4_05329 CDS
T02357
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PputUW4_05329 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_05329 (xth)
Enzymes [BR:
ppuu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
PputUW4_05329 (xth)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PputUW4_05329 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
CbiK
Motif
Other DBs
NCBI-ProteinID:
AFY22518
LinkDB
All DBs
Position
6057870..6058649
Genome browser
AA seq
259 aa
AA seq
DB search
MRIISVNVNGIQAAVERGLLSWLQAQNADVICLQDTRASAFELDDPAFQLDGYFLYACDA
EVPAQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQNGDEDLN
QKFKLMDDFARYLDKQRRKRREYIYCGSLYVAQQKLDIKNWRDSQQSPGFLAPERAWMDE
IVGNMGYVDALREVSREGDQYSWWPDNEQAEMLNLGWRFDYQLLTPGLRRFVRSARLPRQ
PRFSQHAPLIVDYDWTLTI
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcatcagtgtgaacgtcaatggtattcaggctgcagtcgagcgtggtttgctc
agttggctgcaggcacagaatgccgacgtcatctgcctgcaggacacccgcgcctccgcc
tttgaactggacgatccagccttccaactggatggatacttcctttatgcctgcgatgcc
gaagtccccgcccaaggtggcgtggctttgtattcgcggctgcaaccgaaggctgtcatc
agcggtctcggtttcgagacggccgaccgctacgggcgctacctgcaagccgatttcgac
aaggtcagcatcgcgaccttgctgctcccttcggggcagaacggcgatgaagacttgaac
cagaagttcaagctaatggacgacttcgcccgttatctggataaacagcggcgcaaacgt
cgcgagtacatctattgtggctcgctgtacgtggcgcaacagaagctggatatcaagaac
tggcgcgatagccagcaatctccgggtttcctggcgcctgaacgcgcctggatggacgag
attgtcggcaacatgggctatgtcgacgccctgcgcgaagtcagccgggaaggcgaccag
tacagctggtggccggataacgaacaggcggagatgctcaaccttggttggcgcttcgac
tatcaactgctgaccccgggcctgcgccgcttcgtacgcagcgcacgcttgccacgccag
ccgcggttctcgcaacacgcgccgctgatcgtggactacgactggacgctgaccatctga
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integrated database retrieval system
