Pseudomonas parafulva: NJ69_00035
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Entry
NJ69_00035 CDS
T03520
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NJ69_00035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppv03400
]
NJ69_00035
Enzymes [BR:
ppv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NJ69_00035
DNA repair and recombination proteins [BR:
ppv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NJ69_00035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AIZ31511
LinkDB
All DBs
Position
8369..12046
Genome browser
AA seq
1225 aa
AA seq
DB search
MTQARPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEHGFGRELLPPQILVV
TFTDAATKELRERIRTRLAEAARFFRGELDGADPLLYQLRDDYPHDHWPRCASRLEVAVQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFTQSLEIDHSELLGQVMRDYWRRFCYGMHGEA
LAWVRSHWLSPDALLPRIRPLFGRFPADVEGPEPQALIDAALAQRQQQLQALKAPWARWA
DELQEICRAAVAAKQADGRKLQARFFEPWFDKLRTWAGDDQLMELDLGTGFTRLTPDGMA
EAWKSGQPPEHPALQAMTELRAQLQALPGPDAAVLGHAAGWVAARFEVEKRRRAEMGFDD
MLLRLEQALRGEAGERLAGLIREQFPVALIDEFQDTDPVQYGIFERIYRIAENRRETGLF
MIGDPKQAIYAFRGADIFTYLDARRATAGRLHSLDTNYRSSQAMVQAVNSTFLLAERRAQ
GRGAFLFREADDNPLPFVEVRAKGRSERLLIDGQACAALQCWHLPSDEPLSSSQYRQQLA
ARCASHIVALLMGGQLGVSGFADEQGALRGCRPSDIAILVRDGREAQMIRSALTARGVRS
VYLSDKDSVFAAQEAHDLLAWLKACAEPDAERLLKAALASLTLDLPLMELERLNQDERVW
EAWVMRFRLYRETWQRQGVLPMLRRLLHDFQLPRSLIGRSDGERVLTNLLHLAELLQQAA
GELDGEQALIRHLSEQLANAAQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFIC
TSKAVDGQRLPLAWHDRDGQPLLTLSPTAEQIALADDERLAEDLRLLYVALTRAQHACWL
GVADLKRGNQKSSQLHRSALGYLLGGGQPLSDSAQLADWLQTLCAQSAAIACPALPEVDD
QVYQAPRHGTQWRAALKPRRAATEQWWIASYSALRVGDQNVLADSSQAQQLLDDESIDPQ
LLREVPPENGDIHRFPRGPNPGTFLHGLLEWAGREGFAEIASQPALIERTVGQRCNRRDW
SGWIPTLSQWLQHLLIQDLPLASEGTLLRLAHLQQYQIEMEFWFASHRVDVRRLDQLVVR
HTHSGAARPAALASQLNGMFKGFIDLAFELDGRYYVADYKSNWLGPDGNAYNALAMEQAI
LDHRYDLQYVLYLLALHRQLRARLPDYDYDRHVGGALFIFLRGTGSAGRGLYAVRPPREL
IEQLDALFRGDLQPEQQDLFAGATP
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggcccggcctctggccctgagctttcccctgcacggcagccaactgatcgaa
gccagtgccggcaccggcaagaccttcaccatctccgcactctacctgcgcctgattctg
ggccacggcggcgaacacggctttggccgcgaattgctgcctccgcagatccttgtggtg
accttcaccgatgccgccaccaaggagctgcgcgagcgcattcgcacacgcctggccgag
gcggcgcgctttttccgtggagagttggacggcgccgaccccttgctgtatcaactgcgc
gacgactatccacacgaccactggccgcggtgcgccagtcgcctggaagtggcggtgcag
tggatggacgaagcggcggtctcgaccatccatggctggtgtcagcgcatgctgcgcgag
catgccttcgacagcggcagcctgttcacccagagcctggagatcgatcacagtgaactg
ctcggccaagtcatgcgcgattactggcggcgcttctgctatggcatgcacggcgaggcg
ctggcctgggtgcgcagccattggctcagcccggatgcattgctgccgcgtatccgcccg
ctgttcgggcgctttcccgctgacgtcgaaggccctgagccgcaagcgctgatcgacgcc
gccctggcgcaacgccagcagcaactgcaggcgctcaaggcgccctgggcgcgatgggcc
gatgagttgcaggagatctgtcgcgcagcggtggccgccaagcaggctgacgggcgcaag
ctacaggcgcgcttcttcgagccctggttcgacaagctgcgcacctgggccggcgatgat
cagctcatggagctcgacctgggtacgggcttcacccgcttgaccccggacgggatggcc
gaagcctggaagtccggccaaccgcccgagcacccggcactgcaagccatgaccgagctg
cgcgctcaattgcaggcgttacccggccccgatgcggcagtgcttgggcatgccgccggc
tgggtcgcggcgcgcttcgaggtggaaaaacgccgacgcgcggaaatgggcttcgacgac
atgctcctgcgcctggaacaggccttgcgtggcgaggccggcgaacgtttggccgggctg
attcgcgagcagttcccggtggcgctgatcgatgagttccaggacaccgacccggtgcag
tacggcatcttcgagcgcatctatcgcattgccgagaatcgtcgcgaaaccggcctgttc
atgatcggcgaccccaagcaggcgatctacgctttccgcggcgccgatatcttcacctac
ctggacgcccggcgagccactgccggacgcctgcacagcctggacaccaactaccgctcc
agccaggccatggtccaggcggtcaacagcaccttcctgttggccgagcggcgtgcgcag
gggcgcggtgccttcctgttccgcgaggccgatgacaacccgctgcccttcgtcgaagtg
cgcgccaagggccgcagcgaacgcctgctgatcgacggtcaagcgtgcgccgcgttgcag
tgctggcacctgcccagcgacgaaccgctgtccagcagccagtaccgtcagcaattggcg
gcgcgctgcgccagccatatcgtggcgttgctcatgggcggccagctcggggtgagtggc
ttcgctgatgaacagggtgcgttacgtggctgccgtccgtcggacatcgccattctggtg
cgcgatggccgcgaagcgcagatgatccgcagcgcgctgactgcgcgcggcgtgcgcagc
gtctatctgtccgacaaggattcggtgttcgccgcgcaagaggctcacgacctgctggcc
tggctcaaggcgtgcgccgagcccgacgccgaacgtctgctcaaggctgccttggccagc
ctgacgctggacctgccgttaatggagctcgagcgtctgaatcaagacgagcgggtttgg
gaggcctgggtcatgcgctttcgcctgtatcgcgaaacctggcagcgccagggtgtgctg
cccatgctgcgtcgcctgctgcacgacttccagttgccgcgcagcctgatcggccgcagc
gatggcgagcgtgtgctgaccaacctgctgcacctggccgaactgctgcagcaggcggcc
ggcgagctggacggcgagcaggcgctgattcgtcatttgagcgagcaactggccaatgcc
gcgcaggcgggcgaggagcagatcctgcgcctggaaagcgacgagcaactggtcaaggtg
gtgaccatccacaagtccaaaggcctggagtacccgctggtctacctgccgttcatctgc
accagcaaggccgtggacggtcagcgcctgcccttggcctggcacgaccgtgacggtcag
ccattgctgaccctcagccccacagccgaacagatcgccctggccgatgacgaacgcctg
gccgaagacctgcgcctgctctatgtcgccctgacccgcgcccagcatgcctgctggctt
ggggtggccgacctcaagcgcggcaaccagaaaagctcgcagttgcaccgctcggccctg
ggctacctgctcggtggcggacagccgctgtccgactccgctcagttggccgactggttg
cagacgctgtgcgcgcaaagcgctgcgattgcctgcccagcgctgcccgaggtcgatgac
caggtctaccaggccccgcgtcacggtacgcaatggcgagctgcactcaagccacgacgg
gcggcgacggagcagtggtggattgcgtcctacagtgcgttgcgcgtgggtgaccagaac
gtgttggccgacagttcccaggcccagcaactgctcgacgacgaaagcatcgatccgcaa
ctgctgcgcgaggtgccgccggaaaacggtgatatccaccgtttcccacgcggaccgaac
cccggcaccttcctccacggcttgttggaatgggccggccgcgaggggttcgccgagatc
gccagccagcccgcgttgatcgagcgtaccgtgggccagcgctgcaatcgtcgcgactgg
agtggctggattcccacgctcagccaatggttgcagcacctgctcattcaggacttaccg
ctagcttccgagggtacgctgctgcgcttggcgcacctgcagcagtaccagatcgagatg
gagttctggtttgccagccaccgggtcgacgtgcgccgtctcgaccaactcgtcgtgcgc
cacacccacagcggcgccgcgcgcccggcggcactggccagtcagctcaatggcatgttc
aaaggcttcatcgacctggccttcgaactggacggtcgctactacgtggccgactacaaa
tccaattggctcggcccggacggcaatgcctacaacgccctggccatggagcaggcgatt
ctcgatcatcgctacgacctgcagtacgtgctgtacctgctggccctgcaccgccaactg
cgcgcgcgcctgcccgactatgactacgaccgccatgtcggcggcgcgctgttcattttc
ctgcgcggcaccggcagtgccggtcgcggcctgtacgcggtgcggccaccccgtgagctg
atcgaacagctcgatgcgctgtttcgcggcgatctccagcccgaacagcaggacctgttt
gccggagccacaccatga
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