Pseudomonas parafulva: NJ69_00040
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Entry
NJ69_00040 CDS
T03520
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NJ69_00040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppv03400
]
NJ69_00040
Enzymes [BR:
ppv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NJ69_00040
DNA repair and recombination proteins [BR:
ppv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NJ69_00040
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
AAA_11
UvrD_C_2
Helicase_RecD
AAA_22
Viral_helicase1
SH3_13
UvrD-helicase
SLFN-g3_helicase
TraI_hel_assoc_N
AAA_16
AAA_17
PhoH
T2SSE
AAA_28
NTPase_1
AAA_5
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AIZ31512
LinkDB
All DBs
Position
12043..14118
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AA seq
691 aa
AA seq
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MSRTLDDLLPTPLQAEHLAALAPLADSHDLLALLDRWVERGWLRALDRAFVSFLAEREPG
GDPLVLLAAALASHQLGHGHVCLDLEQTLAEPDFALSLPPEGDALAGPLLLPSQLLAALE
PALWRQRIAASGLVADGDSAGHEARPLVLSAQRLYLRRYWRYERRVDHSLQQRIATHEAI
PHDLPARLAQLFEGGAPAGQVDWQKLACALATRAAFSIVTGGPGTGKTTTVVRLLALLQG
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVDATLRAQIPTEVSTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPSRARLVLLGDKDQLASVEAGA
VLGDLCRYAEEGRYTAATQAWLEQVGGQSLHDSGLLPGDAQQHALAQQVVMLRHSRRFGE
GSGIGRLARWVNLQQAEQARALLSLPPDDVFGLALRGEHDRAFDRLLLEGLGRGEEGPQG
YRSYLRTLGRHRPAPGTPADASDWEHWAARVLGSFEGFQLLCAVRRGAWGVEGLNERVAR
VLHGAGLIDTRLPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDETGETSLRVAFARNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPDALNPVLTKELIYTGITRAKA
CFSLIEPRAGVFEEAVKRKVRRISGLALENI
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcaccctcgacgacctgttgcccaccccgttgcaggccgagcacctggcggcc
ttggcgccgcttgccgacagccacgatctgctggcgctgttggaccggtgggtcgaacgc
ggctggttgcgtgcgctggatcgcgcgttcgtcagctttctcgcggagcgtgagccgggc
ggcgatccgttggtgctgctggcggcggcgttggccagtcatcagttggggcatgggcat
gtgtgcctggacctggagcagacgctggccgagcctgacttcgcgctgtcgctgccgccg
gagggcgacgccctggccggaccgttgctgctgccctcacaactgctcgccgccctcgaa
cccgccctctggcggcagcgtatcgcagcgagtggactggtggccgatggcgatagcgcc
gggcatgaggcgcggccgctggtgctcagtgctcagcgcctgtatctacgccgctactgg
cgctatgagcggcgtgtcgaccactcgctgcagcagcgcatcgcgacccacgaagcgatt
ccccacgacctgccggcgcgtctggcgcagttgttcgaaggcggtgctccggctggccag
gtggactggcagaagctcgcctgcgccctggccacccgcgccgccttcagcatcgttacc
ggcggccctgggaccggcaagaccaccaccgtggtgcgcttgctggccctgctccaaggc
ccggcagtggagcagggcaggcctttgcgcatccgcctggcggcgcccaccggcaaggcg
gcagcgcgcctgaccgagtccatcggtcagcaagtcgagcgcttgcaggtggacgctacg
ctgcgtgcgcagattcccaccgaggtgagcacggtgcaccgcctgctcggcagtcgcccc
ggctcgcggcatttccgccaccacgccggtaacccgctgccgctggatgtcctggtggtg
gatgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgacgccttgccaagc
cgcgcgcgcctggtgctgctcggcgacaaggaccagttggcgtcggtggaagccggcgcg
gtgctgggcgatctgtgtcgctatgccgaggaggggcgctacacggcggcgacccaggcc
tggctggagcaggtcggtggccagtcgttgcatgacagcgggctgctgcctggcgatgcg
cagcagcatgccctggcgcagcaggtggtgatgctgcgtcactcccggcgcttcggtgaa
ggcagcggtattggtcggctggcacggtgggtcaacctgcagcaggccgagcaggcgcgc
gcgctgctcagcctgccgccggacgatgtgttcggcctggcgctgcgcggcgagcacgac
cgggccttcgaccgtctgttgctggaggggctggggcgtggcgaagaggggccccagggt
taccgcagttacctgcgtaccctcggccgccatcggccggcaccgggtacaccggctgac
gcgagcgattgggagcactgggcggcgcgggtgctgggcagcttcgagggtttccagttg
ctgtgtgccgtgcgccgcggtgcctggggtgtggagggtctgaacgaacgggtggcgcgg
gtgctgcacggcgccggcctgatcgatacacgcctgccgtggtacgaggggcgacccgtg
ctggtcacccgcaacgattacggcctgggcttgatgaatggcgatatcggcattgccctg
cggctgccggacgagacgggtgaaacctcgctgcgcgtagcattcgcgcgcaacgacggt
tcaggcggcgtacgcttcgtgctgcccagccggctcaacgaggtggaaaccgtcttcgcc
atgacggtgcacaagtcccagggttcggaattcagtcacaccgccctggtgctgcccgat
gcgctgaacccagtactcaccaaagagctgatctataccggtatcacccgtgccaaagcc
tgcttcagcttgatcgagccgcgagccggcgtgttcgaggaggccgtcaagcgcaaggtg
cgacggatttctggccttgcgctggaaaatatctga
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