Pseudomonas parafulva: NJ69_01875
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Entry
NJ69_01875 CDS
T03520
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03410
Base excision repair
ppv03430
Mismatch repair
ppv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NJ69_01875
03430 Mismatch repair
NJ69_01875
03440 Homologous recombination
NJ69_01875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppv03400
]
NJ69_01875
DNA repair and recombination proteins [BR:
ppv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NJ69_01875
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NJ69_01875
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NJ69_01875
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AIZ31844
LinkDB
All DBs
Position
424737..426446
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AA seq
569 aa
AA seq
DB search
MRIEPRPLPATLPFLGQLPPLLTRLYAARGVQSELELDKSLARLLPYQQLKGIDAAVDLL
VEALDRRQRILIVGDFDADGATASTVGVLGLRLLGAAQVDYLVPNRFEYGYGLTPEIVEV
ALQREPHLLVTVDNGISSVEGVAAAKAAGLKVLVTDHHLPGEQLPQADAIVNPNQPGCTF
PSKSLAGVGVIFYVLMALRARLRSLGRYETQAQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCEDPATALDMAAQLDGLNQDRKSIEQGMQREALAQLKDLPLDAMPYGLCLFDAEWHQG
VIGILASRLKERYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGG
HAMAAGLSLPAEHFPVFAEAFDQEVRRQLDEDDLTGRLLSDGSLAVEEFHLDLARALRNA
GPWGQHFPEPLFHGVFELVEQRVVGERHLKVVLKSECGSLRLDGIAFSVDREVWPNPTVR
WVELAYKLDVNEFRGNESVQLMIAHMEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgagccccgccccctgcctgcaaccctgccgtttctcggccaactgccgccc
ctgctgacccgtctgtacgccgcccgtggcgtgcagagtgagctggaactggacaagagc
ctggcgcgcttgctgccctatcagcagctcaagggcatcgacgctgccgtggacctgctg
gtggaggccctggaccggcgccagcgcatcctcatcgtcggcgacttcgacgctgatggc
gctacagccagcaccgtcggcgtgctcggcctgcgtctgctcggtgcagcccaggtcgat
tacctggtgcctaatcgcttcgagtacggttacggcctgacgccggaaatcgtcgaggtg
gcgctgcagcgcgagccgcacctgctggtgacggtggacaacgggatctccagcgtcgaa
ggcgtcgctgcggcgaaggcggccgggctcaaggtgctggtcaccgaccaccacttgccg
ggcgagcagttgccgcaggctgatgccatcgtcaacccgaaccagcccggttgcaccttc
cccagcaaatcgctggccggggtgggggtgatcttctacgtgctcatggcgctgcgcgcg
cgcttgcgcagcctgggccgctacgagacccaggcgcaaccgaacataggggagttactc
gatctggtggccctgggcagcgtcgccgatgtggtgccgctggatgccaacaaccgcatc
ctggttcatcagggactcgagcgcatccgtgcgggccgcgcgagacctggcctgaaggcc
atccttgaagtcgcgcggcgcgatcatcggcgcatcacctcaaccgacctgggcttcatt
ctcgggcctcggctcaatgcagcagggcgtctggacgacatgagcctgggcatcgaatgc
ctgctctgcgaagaccccgccacggcgttggacatggcagcgcaactggatgggctcaac
caggaccgcaagtccatcgaacaaggcatgcagcgcgaagcgttggcccagctcaaggac
ctgccgctcgacgccatgccctatgggctgtgcctgttcgatgccgaatggcaccagggc
gtgatcggcatcctcgcctcgcgcttgaaggagcgctatcaccgtccgaccatcgccttc
gccgacgccggcgaaggcatgctcaagggctcggcgcgctcggtaccggggtttcacatt
cgcgatgccctggatgcggtggcggcgcggcacccccagttgatcagcaagttcggcgga
catgccatggcggcaggcttgtcgctgccggctgagcatttcccggtgttcgccgaggcg
ttcgaccaggaggtgcgacgccaattggatgaggacgatctgaccggtcggttgctgtcc
gacggcagcctggcggtcgaggagttccacctcgaccttgcccgcgccctgcgtaatgcc
ggcccctgggggcagcattttcccgagccgttgttccacggcgtgtttgagttggtggag
caacgggtggtcggcgagcgccatctgaaagtggtgctcaagagcgagtgcggttcgctg
cgtcttgatggcatcgctttcagcgtcgatcgcgaggtatggcccaacccgacggtgcgc
tgggtggagctggcctacaaactggatgtgaacgagtttcgcggcaacgaaagtgtgcag
ttgatgattgcgcatatggagccgcgctga
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