Pseudomonas parafulva: NJ69_02580
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Entry
NJ69_02580 CDS
T03520
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ppv
Pseudomonas parafulva
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppv03021
]
NJ69_02580
Transcription machinery [BR:
ppv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
NJ69_02580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIZ31984
LinkDB
All DBs
Position
complement(582513..585359)
Genome browser
AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG
DQITHFDGWKLTVQEVDDVDGLLVYHGLDGQNQPRTLPETQLSNFIQFRLASDRLFAGQI
DPLSWFSLRYNTLQHNSKQLLSPLWGLGGCRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIESDA
SNPFEDAQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEEQASAEYALVEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPVAEAVQELLDE
GRLSPKAHATIHNFLGAEGEALLAAVADGDTQASARLIRELLDRHGTGRVLFRNTRAAIQ
GFPERQLHPYPLANPAQYSELPAGERAELYPEVAFQAQGEGGEDERWWRFDPRVDWLIDT
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMSILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIGQLHTIQLHIPYLQDSP
QERLFQWYQEGLNAFLNTCPTGNALQHQFGPRLLTLLAANDSSAWNALVAEARAERERLE
AELHTGRDRLLELNSGGAGEGEALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL
VLKPSEKMLDASFPLGDDEGVTITYDRGQALSREDMQFLTWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPSAALRCLLDANGNDLAARVAF
ETLNDQLESVPRASANKFIQAQREVLAKRIAAGEAKVLPVHDERVAEAQRRLSAEADEEL
ARLTALKAVNPSVRDSEIDALRLQREQGLAMLDKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggatcagcgacagcgaagcggagctcggc
ctgggaaccatcctggcgcaggatggccgcctgctgaccgtgctttatccggccacgggc
gatacccgtcagtacgccctgcgcaacgcaccgttgacccgcgtgcgcttctcgccaggt
gaccagatcacccatttcgacggctggaagctcaccgtgcaagaggtcgatgatgtcgat
ggcctgctggtttatcacggtctggacgggcagaaccagcctcgtaccttgccggaaacg
caactgtcgaacttcattcagttccgtctggccagcgaccgcttgttcgccggccagatc
gacccgctgtcgtggttctcgctgcgttacaacaccctgcagcacaacagcaagcagttg
ctctccccgctctggggcctgggcggctgccgcgcccagccgatcgcccaccaattgcat
atcgcccgcgaagtggccgaccgtatcgcaccgcgtgtgttgctggccgacgaagtcggc
ctgggcaagaccatcgaagccggcctggtgatccatcgccaactgctgtccggccgagcc
agccgcgtgctgatcctggtgccggagaacctgcagcaccagtggctggtggaaatgcgc
cgacgcttcaacttgcaggtggcgctgttcgacgccgagcgtttcatcgaaagcgatgcc
agcaacccgttcgaagacgcccagcttgcgctggtggcactggagtggctggtcgacgac
gagaaggctcaggatgcgctgttcgcggcgggctgggacctgatggtggtcgacgaagcc
caccacctggtgtggcatgaggagcaggccagcgccgagtatgcgctggtcgagcaactg
gccgaagtcattcccggcgttttgctgctcaccgccactcccgagcaactgggtcaggac
agtcacttcgcgcgtctgcgcctgctcgatcccaaccgcttccacgacttggccgcgttc
cgcgccgagagcgaacattatcgtccggtggccgaggcggttcaggaactgctcgacgaa
ggccgcctgtcgcccaaggcccatgccaccatccacaatttcctcggtgccgaaggcgaa
gctctgctggcagccgtggccgatggcgacacccaggccagcgcgcggctgatccgcgaa
ctgctcgaccgtcacggcaccggtcgcgtgttgttccgcaacacccgcgcggcgatccaa
ggcttccccgagcgtcaactgcacccctacccgctggccaatcccgcacagtacagcgag
ctgccggccggcgagcgcgccgagctgtacccggaagtggcgttccaggcccagggcgag
gggggtgaggacgagcgctggtggcgtttcgatccgcgagtcgactggttgatcgacacc
ctgaaaatgctcaagcgcaccaaggtgctggtgatctgcgcccatgccgaaaccgccatg
gacctggaagacgccctgcgcgtgcgctccggtattccggccacggtgttccacgaaggc
atgagcattctcgagcgcgaccgcgcagcggcctatttcgccgacgaggaattcggtgcc
caagtgttgatctgctcggaaatcggcagtgagggccgcaacttccagttcgctcaccac
ctggtgatgttcgacctgccagcccacccggacctgctcgaacaacgcatcggtcgcctg
gaccggatcggtcaactgcacaccattcaattgcacattccgtacctacaggacagtcct
caggaacgcctgttccagtggtaccaggaaggcctgaacgccttcctcaatacctgtccg
accggcaacgccttgcagcaccagttcggcccgcgcctgttgacgttactggccgccaat
gacagcagcgcctggaacgccttggtcgctgaggcccgcgccgagcgcgagcgcctggaa
gccgagctgcacacggggcgcgaccgcctgctggagctcaactccggtggcgccggcgaa
ggcgaggcactggtcgaagccattctcgagcaggacgaccagttcgccctgcccatctac
atggaaaccttgttcgacgctttcggcatcgacagcgaggaccattccgagaacgcgctg
gtgctcaagcccagcgaaaagatgctcgatgccagcttcccactgggcgacgacgaaggg
gtgaccatcacctacgaccgcggccaggcactgtcgcgcgaggacatgcagttcctcacc
tgggagcaccccatggtgcagggcggcatggacctggtgctgtccggctcgatgggcaat
accgcggtagcgctgatcaagaacaaggcgctcaagcccggtaccgtgctgctcgaactg
ctgtacgtcagcgaggtggtggcgccgcgcagcctgcagttgggccgctacttgccttcg
gcggcgctgcgctgtctgctcgatgccaacggcaatgacctggcggcgcgggtggccttc
gaaacactcaacgaccagctcgaaagcgtgcccagggccagcgccaacaagttcatccag
gcccagcgcgaggtgctggccaagcgcattgccgctggcgaagccaaggtactgccggtg
cacgacgagcgcgtcgccgaagcgcaacgccgcctgagtgccgaggccgacgaggaactg
gcacgcctgaccgcgctcaaggcggtcaacccgagcgtgcgtgacagcgagatcgatgcg
ctgcgcctgcagcgcgagcagggtctggcaatgctcgacaaggccgctctgcgcctggaa
gcgattcgcgtgctggtcgccggctga
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