Pseudomonas parafulva: NJ69_02885
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Entry
NJ69_02885 CDS
T03520
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppv
Pseudomonas parafulva
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppv03016
]
NJ69_02885
Enzymes [BR:
ppv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NJ69_02885
Transfer RNA biogenesis [BR:
ppv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NJ69_02885
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AIZ32039
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All DBs
Position
648926..650059
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AA seq
377 aa
AA seq
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MAIEIHWIRDDQTLAERCRAWRELPFVAVDTEFMRVDTFYPKAGLVQVGDGQRAFLIDPL
AIRDWQPLGELLEDSTVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAGGYLNIGFSMGY
SRLVQDVLGIELPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFEALRPRLSDDKYAWV
LEDGAELVAQMRREVDPQTLYREVKLAWKLGPQQLAVLRELCAWREREARSRDVPRNRIL
KEHALWPMAKGQPDNLSALAKIEDMHPRTIRQDGETLLKLIKDAASQPPEQWPAVLAEPL
PIEAAGLIKRLRAIGQAEGERLGIAPELMLRKKSLEALLKSGYPNGPYQLPESLRGWRRE
RMGQALLADLAGAGETP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgaaatacactggatccgtgatgaccagaccctggccgaacgctgccgggcc
tggcgcgaactgcctttcgtggccgtcgacaccgagttcatgcgggtcgacaccttctat
cccaaggccggcctggttcaggtcggcgacggtcaacgggccttcctcatcgatccgctg
gcgatccgcgactggcagccgctgggcgagttgctcgaagacagcacggtggtcaaggtg
ctgcacgcctgcagcgaagacctcgaggtgctgttgcgcctgaccggcaaactgccgcag
ccgctgttcgacacccagttggcgggcggctatctgaacatcggcttttccatgggctat
tcgcgcctggtccaggacgtgctcggtatcgagctgcccaagggcgagacccgctccgac
tggctgcagcgaccgttgtccgacacccaggtgagctacgccgccgaagatgccgtgcac
ctggccgagctgttcgaagccctgcgcccgcggttgtccgacgacaagtacgcgtgggtg
ctggaagacggtgccgagctggtggcgcagatgcgccgcgaggtcgatccgcagacgctc
taccgcgaggtcaagctggcctggaagctgggtccgcagcagctcgccgtgctgcgcgag
ctgtgtgcctggcgcgagcgcgaagcccgcagccgcgacgtgccgcgcaatcgcatcctc
aaggagcacgcactttggcccatggccaaaggtcagccggacaacctctcggccctggcc
aagatcgaggacatgcatccgcgcaccatccgccaggacggcgaaacgctgctcaagctg
atcaaggacgctgccagccaaccgcccgagcaatggccggcggtgctggccgagcctctg
ccgatcgaggccgccggcctgatcaagcgcctgcgcgccatcggccaggctgaaggtgaa
cgcctgggcatcgcgccggaactgatgctgcgcaagaaatccctggaagccctgctcaag
agcggctatcccaacggcccctaccaactgcccgaatcgctgcgcggctggcgccgcgaa
cgcatgggccaggccctgctggctgatctggcaggtgccggagagacgccatga
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