Pseudomonas parafulva: NJ69_03490
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Entry
NJ69_03490 CDS
T03520
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NJ69_03490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppv03019
]
NJ69_03490
03400 DNA repair and recombination proteins [BR:
ppv03400
]
NJ69_03490
Enzymes [BR:
ppv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NJ69_03490
Messenger RNA biogenesis [BR:
ppv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NJ69_03490
DNA repair and recombination proteins [BR:
ppv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NJ69_03490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
Sigma70_r4_2
GerE
HTH_23
HTH_29
HTH_28
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
AIZ32145
UniProt:
A0A0A7JKY5
LinkDB
All DBs
Position
792567..794711
Genome browser
AA seq
714 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRNGLT
VVVSPLIALMDDQVATLDELGVAAAALNSTLSAEQQRDLAARLRRGEVKMLYLAPERLVQ
PRMLDFLRDLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRT
REEIVQRLHLQGAERFLSSFDRPNIFYRIVPKESPRKQLMAFLAERRGNAGIVYCLSRKK
VDETAAFLCEQGFPALPYHAGLPAETRSANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRVEQHK
LDAMLALCEETRCRRQALLAYFDEVLEQPCGHCDNCVDQVQTWDATEPARQALSAVFRTG
QRYGVGHLVDVLLGKDNEKVRSFGHEKLSVFGVGKALGEHEWRSLFRQLVARGLVDIDLE
GYGGLRLSDTCRPLLRGEVNLQLRRDLKPQTVAKSSSGGGSPASQLVRVEERELWEALRT
LRRKLAEEHSVPPYVIFPDSTLLEMLRSQPTSLSDMAQVSGVGARKLERYGQAFLEVLNG
AGGTEEAPKVVLDLRHELVSLARAGMTPAQIAGQLACSEKNVYSLLAEAIGRQELSLEQA
LDLPEELMMEIQDAFLDGEGELPPVSALLPQFAQRVPEGVLYCVRAALAAEFEL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgtcctcaaggacatcttcggctacgacagcttccggggt
cgccaggcggcgatcatcgaatgcgtggccaacggtggcgatgcgctggtgctgatgccc
accggcggcggcaaatcgctgtgcttccaggtgcccggcctgttgcgcaacggcctgacc
gtggtggtgtcgccgctgatcgcgctgatggacgaccaggtcgccaccctcgacgaactc
ggcgtggcggcggcggcgctgaactccaccttgagtgccgagcagcagcgcgacctggcc
gcgcgcctgcgccgcggcgaagtgaagatgctttacctggcgcctgagcgcctggtgcag
ccgcgcatgctggacttcctgcgcgacctggacatcgccctgttcgcgatcgatgaagcg
cactgcgtgtcgcagtgggggcacgacttccgtcccgagtacctgcaactgggtcagctc
gccgagttgttcccccatgtgccgcgtatcgccctgaccgccaccgccgacatgcggacc
cgcgaggaaatcgtccagcgcctgcacctgcagggcgccgagcggttcctgtcgagtttc
gaccggcccaacatcttctaccgcatcgtgcccaaggaatcgccacgcaagcaattgatg
gccttcctcgccgagcgtcggggtaacgccggtatcgtctattgcctgtcgcgcaagaag
gtcgacgagacggcggccttcctctgcgagcaaggcttcccggcgctgccgtaccatgcc
ggcctgcccgccgagacccggtcggccaaccagcaccggttcctcaacgaggaagggctg
atcatggtcgcgaccatcgccttcggcatgggcatcgacaagcccaacgtgcgcttcgtc
gcccacctcgacctgcccaagtcgctcgaggcctattaccaggaaaccggacgtgccggc
cgtgacggcctgccctccgatgcctggatggcctatgggctgcaggacatggtgatgctc
aagcagatgctgcagaactccgaaggcgacgagcgccacaagcgtgtcgagcagcacaag
ctcgatgccatgctggcgctgtgcgaggaaacccgctgccgtcgtcaggcgctgctggcg
tacttcgacgaagtgctggagcagccttgtggccattgcgacaactgcgtcgaccaggtg
cagacctgggatgccaccgagcccgcgcgccaggccctgtcggcggtgttccgcaccgga
cagcgctatggtgtcgggcatctggtcgatgtgttgctgggcaaggacaacgagaaggtg
cgcagtttcggtcacgagaagctctcggtgttcggcgtcggcaaggccttgggcgaacac
gaatggcgctcgctgttccgccagttggtggcgcgcgggttggtggacatcgatctggaa
ggctacggcggcctgcggctttccgacacgtgccggccgctgctgcgcggcgaggtcaac
ctgcaactgcgccgcgacctcaagccgcaaacagtcgccaagtcctcgagcggtggcggc
agcccggccagccaattggtgcgtgtcgaggagcgcgagctgtgggaggcgctgcgcacc
ctgcggcgcaagttggccgaggagcacagcgtgccaccgtacgtcatcttccccgactcc
accttgctggagatgttgcgcagccagcccaccagcctcagcgacatggcccaggtcagc
ggcgtcggtgcacgcaagctggagcgctatggccaggccttcctcgaggtgctcaacggc
gccggtggcaccgaggaggcgcccaaggtggtgctcgacctgcgccacgagttggtcagt
ctggcccgtgcggggatgacgccggcgcagatcgccgggcaactggcgtgcagcgagaag
aatgtgtacagcctgctggccgaggccatcggtcgtcaggaactgagccttgagcaggcg
ctggacctgcccgaggagctgatgatggaaattcaggacgccttcctcgacggcgaaggc
gagctgccaccggtgtcggccttgttgccacagttcgcgcagcgggtgccggaaggcgtg
ctgtactgcgtacgcgcagcactggcggccgagttcgagctctga
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