Pseudomonas parafulva: NJ69_03555
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Entry
NJ69_03555 CDS
T03520
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NJ69_03555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppv03019
]
NJ69_03555
03009 Ribosome biogenesis [BR:
ppv03009
]
NJ69_03555
Enzymes [BR:
ppv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NJ69_03555
Messenger RNA biogenesis [BR:
ppv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NJ69_03555
Ribosome biogenesis [BR:
ppv03009
]
Prokaryotic type
rRNA helicases
NJ69_03555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AIZ32157
UniProt:
A0AAI8K9X1
LinkDB
All DBs
Position
806982..808661
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AA seq
559 aa
AA seq
DB search
MTQETGGFAALDLHPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAT
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPGPQAVLDARIKKLTASLAPLVAEAEATHGELFDRLTADLGCSARAL
SAALLRKATNGQSLDLAAVEREQPLVPTHTPRERSGERSDRGERAERGDRERRAPMPLAE
GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEEGLERLLTK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgctctcgatcttcatccgaacatcgttgctgcc
gtattggccacaggctatgaagagccatcggccatccagcaacagtcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgacgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagctaccgctttcgaaacctacgccaagcag
atgccgggcgtgaatgtcgtggccgtgtacggtggtgccccgatgggcccacagttgcgc
gccatccgcaatggcgcccagatcgtggtcgccaccccaggccgtctctgcgatcacctg
cgccgtgacgagaaagtgctttccaccgttcagtacctggtactcgacgaagccgacgag
atgctcaagctgggcttcatggacgacctcgaagtgatcttcgacgcgatcccagcgacc
cgtcagaccgtgctgttctccgcgaccctgccgtcgtcgatccgctcgatcgccgagcgt
catctgcgcgagcccaagcacgtcaagatccagagcaagacccagactgtcaccgccatc
gaccaggcacacctgatggtccatgccgaccagaagatcccggccgtactgcgtctgctg
gaagtcgaggaattcgacgcgctgatcgccttcgtgcgtaccaagcaggccaccctggat
ctggctgctgcgctggaagccaagggttacaaggccgctgcgctgaacggcgacatcgcc
cagaaccagcgcgagcgcgtcatcgactcgctcaaggacggtcgtctggacatcgtcgtc
gcgaccgacgtcgctgcccgtggtctggacgtcccgcgcatcacccacgtgttcaacgtg
gacatgccgtacgatcctgaatcctacgtgcaccgtatcggtcgtactggccgtgccggt
cgtgaaggtcgtgccctgctgttggtgaccccgcgtgagcgtcgcatgctgcaggtgatc
gagcgcgtcactgggcagaaggtcgccgaagcccgtctgcctggcccgcaagccgtgctg
gatgcgcgcatcaagaaactgaccgccagcctggcaccattggtggccgaggccgaagcg
acccacggcgagctgttcgatcgcttgactgccgacttgggctgctcggcccgtgcgctg
tccgccgccctgctgcgcaaggcgaccaacggtcagtcgctggacctggccgccgtcgag
cgcgagcagccgctggtgccgacccacacgccgcgcgagcgtagcggcgagcgcagtgac
cgtggcgagcgcgctgagcgcggcgaccgcgagcgtcgtgcaccgatgccactggctgaa
ggccgcgtgcgttgccggactgccctgggtgcacgtgacggcatcgccgccaagaacctg
ttgggtgcgatcctcaacgaaggcggtctggcccgcgacgccatcggccgcatccaggtg
cgcgacagcttcagtctggtcgagctgcctgaggagggtctggagcgtctgctgaccaag
ctcaaggacacccgcgtagccggcaagcagctcaagctgcgtcgctatcgcgaggactga
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