Pseudomonas parafulva: NJ69_15900
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Entry
NJ69_15900 CDS
T03520
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppv
Pseudomonas parafulva
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppv03016
]
NJ69_15900
Enzymes [BR:
ppv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NJ69_15900
Transfer RNA biogenesis [BR:
ppv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NJ69_15900
Prokaryotic type
tRNA splicing ligases
NJ69_15900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AIZ34371
LinkDB
All DBs
Position
complement(3661425..3662630)
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AA seq
401 aa
AA seq
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MNLLEVAGGKPIKLWTDGVPVDDAARQQLMNTARLPFIFKHLAVMPDVHVGKGSTIGSVI
PTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRSAIEKAVPHGKTHGRRDQGAW
GDVPSQADQAWSALAGRFKAITDKYPQLEKTNNRQHLGTLGGGNHFVEVCLDEADRVWFM
LHSGSRGVGNAIGSLFIERAQADMRQHLANLPDRNLAYFEEGSRYFADYVEAVEWAQDFA
RHNRELMMRATVAATRSVLGRPFEASLEAINCHHNYVQREQHFGQEVLVTRKGAVSARQD
ELGIIPGSMGAKSFIVRGLGNAESFCSCSHGAGRVLSRTQAKQRFTVEDQRRATAHVECR
KDAAVIDEIPMAYKDIDAVMNAQRELVEVLHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgttggaagtggctggcggcaagccgatcaaactgtggaccgacggcgtgccg
gtggatgacgccgcgcgccagcaactgatgaacacggcgcgcctgccgttcatcttcaag
cacctggcggtgatgcccgacgtgcacgtgggcaagggttcgaccatcggcagtgtgatc
cccaccgtcggggcgatcatcccggcggcggtgggtgtcgatatcggctgcggcatgatc
gcggcgcgcacgtcgctgcacgcccgcgacctgccggacaacctgcacggcctgcgcagc
gccatcgagaaagcggtgccccatggcaagacgcacgggcgtcgcgaccaaggggcgtgg
ggcgatgtgcccagccaggccgaccaggcatggagcgcgctggcggggcgcttcaaggcg
atcaccgacaagtaccctcagttggagaagaccaataaccgccagcacctgggtaccctg
ggcggcggcaaccatttcgtcgaggtgtgcctggacgaagccgaccgggtctggttcatg
ctgcacagcggctcgcgcggggtgggcaatgccatcggcagcctgttcatcgagcgcgcc
caggccgacatgcgtcagcacctggccaacttgccggaccgcaacctggcgtatttcgag
gaaggcagtcggtatttcgccgactacgtcgaggcggtggagtgggctcaggacttcgcc
cggcacaaccgcgagctgatgatgcgcgccaccgtggcagcgacccgcagtgtgctgggc
aggcccttcgaggccagcctggaggcgatcaactgccatcacaactacgtgcagcgtgag
cagcatttcggccaggaggtgctggtgacgcgcaagggggcggtgtcggcgcgccaggac
gagctgggcatcattcccggctccatgggcgccaagagtttcatcgtccggggcctgggc
aatgccgagtcgttctgctcgtgcagccacggcgcgggtcgggtgctgagccggacccag
gccaagcagcgtttcaccgtcgaagaccagcgtcgcgccactgcccatgtggagtgccgc
aaggatgcggcggtgatcgacgaaatcccgatggcctacaaggacatcgatgcggtcatg
aacgcccagcgcgagctggtcgaagtgttgcacaccctgcgtcaggtggtgtgcgtgaaa
ggttga
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