Pseudomonas parafulva: NJ69_16670
Help
Entry
NJ69_16670 CDS
T03520
Name
(GenBank) RNA polymerase subunit sigma-70
KO
K03086
RNA polymerase primary sigma factor
Organism
ppv
Pseudomonas parafulva
Pathway
ppv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NJ69_16670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppv03021
]
NJ69_16670
Transcription machinery [BR:
ppv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NJ69_16670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
ANAPC15
Dicistro_VP4
Motif
Other DBs
NCBI-ProteinID:
AIZ34509
LinkDB
All DBs
Position
3810362..3812212
Genome browser
AA seq
616 aa
AA seq
DB search
MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILGEYDRVTTEGGRLSDVLSGYIDPDDNIAAPTEE
VPVIGAKASAAKEESDEEEEESADGDEEEETESGPDPVIAAQRFGAVSDQLQATNKVVKK
HGRGAKESVQALQALADLFMPIKLVPKQFDALVERVRGALDRLRQQERAIMQLCVRDARM
PRADFLRLFPSNETDQTWSGDLAKRSTKWAAALGEKDAAIVACQQKLIDLETESGLTVAE
IKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtatcaaagagttgatcacccgcggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgccctgctgttggcggaagccgacaccgacgaagccgcggccgag
gaagccgccgctgcgttggcagcagtcgaaaccgatatcggccgcacgaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtcgagctgctgacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgtgaagtcatgggcgccatcgcccacttcccg
ggcaccgtcgatcacattctcggcgagtacgaccgcgttaccaccgaaggcggccgcctg
tcggatgtgctcagcggctacatcgaccctgacgacaacatcgccgcaccgaccgaagag
gtgccggtcatcggcgccaaggcgtccgccgccaaggaagagtccgacgaggaagaagaa
gagagcgccgacggcgacgaagaggaagagaccgagagcggtccggaccctgtcattgcc
gcacagcgtttcggtgcggtctccgaccagctgcaggccaccaacaaggtggtgaagaag
catggtcgcggcgccaaggaaagcgtccaggcactgcaagccctggccgacctgttcatg
ccgatcaagctggtacccaagcagttcgacgcgctcgtcgagcgtgtgcgcggtgccctc
gaccgcctgcgtcaacaggaacgcgccatcatgcagctgtgcgtgcgtgatgcccgcatg
cctcgcgccgacttcctgcgcctgttccccagcaacgaaaccgaccagacctggagcggt
gatctggccaagcgcagcaccaagtgggctgccgcgctgggcgagaaagacgcggccatc
gtcgcctgccagcagaagttgatcgacctcgaaaccgaaagcggtctgaccgttgccgaa
atcaaggaaatcaaccgccgcatgtccatcggcgaggcgaaagcccgtcgcgccaagaaa
gaaatggtcgaggcgaacctgcgtctggtgatttccatcgccaagaagtacaccaaccgt
ggcctgcaattcctcgatctgatccaggaaggcaacattggcttgatgaaggcggtggac
aagttcgaataccgtcgtggctacaagttctcgacctacgccacctggtggattcgccag
gcgatcacccgctcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccggcagatgctgcaggaaatgggtcgcgaa
ccgacgccggaagagctgggcgagcgtatggaaatgcctgaggacaagatccgcaaggta
ttgaagatcgccaaagagccgatctccatggaaaccccgatcggcgacgacgaagactcg
cacctgggcgacttcatcgaggactccaccatgcagtccccgatcgatgtcgccacggtc
gaaagcctcaaggaagccacgcgcgacgtactctcgggccttaccgcccgtgaagcgaaa
gtgctgcgcatgcgcttcggcatcgatatgaacaccgaccacaccctcgaagaggtcggc
aagcagttcgacgtgactcgcgagcggatccgtcagatcgaagccaaggcgctgcgcaaa
ctgcgtcatccgacgcgcagcgagcatctacgctccttcctcgacgagtga
DBGET
integrated database retrieval system