Pseudomonas parafulva: NJ69_17515
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Entry
NJ69_17515 CDS
T03520
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv00250
Alanine, aspartate and glutamate metabolism
ppv00310
Lysine degradation
ppv00350
Tyrosine metabolism
ppv00650
Butanoate metabolism
ppv00760
Nicotinate and nicotinamide metabolism
ppv01100
Metabolic pathways
ppv01120
Microbial metabolism in diverse environments
Module
ppv_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
NJ69_17515 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
NJ69_17515 (gabD)
00310 Lysine degradation
NJ69_17515 (gabD)
00350 Tyrosine metabolism
NJ69_17515 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
NJ69_17515 (gabD)
Enzymes [BR:
ppv01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
NJ69_17515 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
NJ69_17515 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
NJ69_17515 (gabD)
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GFIT
Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AIZ34669
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All DBs
Position
complement(4015340..4016782)
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AA seq
480 aa
AA seq
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MQLKDAQLFRQQAFINGEWLDADSGQTIQVTNPATGDVIGSVPKMGAAETRRAIEAADKA
LPAWRALTAKERSAKLRRWFELMIEHQDDLARLMTTEQGKPLAEAKGEIAYAASFIEWFA
EEAKRVYGDTIPGHQPDKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK
PASQTPYSALALVELATRAGIPAGVLSVVTGSAGEVGGELTGNALVRKLSFTGSTEIGRQ
LMEECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYVQDG
VYDAFAEKLKAAVAKLKIGNGLEDGTTTGPLIDHKAVAKVQEHIEDAVSKGAKVLSGGKL
IEGNFFEPTILVDVPKHAAVAKEETFGPLAPLFRFKDEAEVIALSNDTEFGLASYFYARD
MSRVFRVAEALEYGMVGINTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCISV
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaaagacgctcagttgttccgccagcaggccttcatcaacggtgagtggctg
gacgcggacagcggtcagaccatccaggtgaccaacccggccacgggcgatgtcatcggc
agcgtgccgaagatgggcgctgcggaaacccgccgcgccatcgaggccgccgacaaggcc
ctgccggcctggcgcgcgctgacggccaaagagcgttcggccaagctgcgtcgctggttc
gagctgatgatcgagcaccaggacgacctggcccgcctgatgaccaccgaacaaggcaaa
ccgctggccgaagccaagggcgagatcgcctacgcggcgtcgttcatcgagtggttcgcc
gaagaagccaagcgcgtctacggcgacaccattcctggccatcagccggacaagcgcctg
atcgtcatcaagcagccgatcggcgtcaccgccgccatcaccccgtggaacttcccggcg
gcgatgatcacccgtaaagccggcccggccctggccgctggctgcaccatggtgctcaag
cccgcctcgcagaccccgtactccgccctggccctggtcgaactggccacccgcgccggc
atcccggcgggcgtgttgagcgtggtcaccggcagcgccggcgaagtcggcggcgagctg
accggcaacgcgctggtgcgcaaactgtcgttcaccggctcgaccgaaatcggtcgccaa
ctgatggaagaatgcgccaaggacatcaagaaagtgtccctggagctgggtggcaacgcc
ccgttcatcgtgttcgacgacgccgacctggacaaggcggtcgagggcgcgatcatctcc
aagtaccgcaacaacggtcagacctgcgtctgcgccaaccgcctctatgtgcaggacggc
gtgtatgacgccttcgccgagaagctcaaggcggcggtcgccaagctcaagatcggcaat
ggcctggaagacggcaccaccaccggcccgctgatcgaccacaaggccgtggccaaggtc
caggaacacattgaagacgccgtgtccaaaggcgccaaggtgctgtccggcggcaagctg
atcgaaggcaacttcttcgagccgaccattctggtggacgtgcccaagcacgcggccgtg
gccaaggaagaaaccttcggcccgctggccccgctgttccgcttcaaggacgaggccgaa
gtcatcgccctgtccaacgacaccgagttcggcctggcctcctacttctatgcccgcgac
atgagccgcgtgttccgcgtcgccgaggcgctggagtacggcatggtcggcatcaacacc
ggcctgatctccaacgaagtcgcgccgttcggcggcatcaaggcctcgggcctgggccgc
gaaggttccaagtacggcatcgaggactacctcgaaatcaaatacctgtgcatcagcgtc
tga
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