Pseudomonas parafulva: NJ69_18220
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Entry
NJ69_18220 CDS
T03520
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NJ69_18220 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppv03021
]
NJ69_18220 (rho)
03019 Messenger RNA biogenesis [BR:
ppv03019
]
NJ69_18220 (rho)
Transcription machinery [BR:
ppv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NJ69_18220 (rho)
Messenger RNA biogenesis [BR:
ppv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NJ69_18220 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AIZ34798
UniProt:
A0AAI8PDI4
LinkDB
All DBs
Position
complement(4170023..4171282)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNHRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NKSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgacagaactcaagcaaaagccgattaccgatctgctggaaatggccgaacag
atgggcatcgaaaacatggcccgttcgcgcaagcaggacgtgattttcgccctgttgaaa
aaacacgccaagagcggcgaagaaatctcgggtgacggcgtgctggagattctccaggat
ggattcggtttcctgcgttcggcagacgcctcgtacctggccggccctgacgatatctac
gtctcgcctagccagatccgccgcttcaacctgcgcaccggcgataccatcgtcggcaag
atccgtccgccgaaggaaggggagcgttacttcgcgctgctgaaggtcgataccatcaac
ttcgaccgtccggaaaacgcgaagaacaagatcctcttcgaaaacctgacgccgctgttc
cccaaccatcgcctgaagatggaagcgggtaacggctccaccgaagacctcaccggtcga
gtcatcgatctgtgcgcgcccatcggcaaaggtcagcgcggcttgatcgtcgccccgccg
aaagcgggcaagaccatcatgttgcagaacatcgcggccaacatcacccgcaacaatccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccgacccgccacgtg
caggtcgccgaaatggtcatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctggactccatcacccgtctggcccgtgcctacaacaccgtgattccgagc
tccggcaaggtgctcaccggtggtgtcgacgcccatgccctggaaaagcccaagcgcttc
ttcggcgccgcccgtaacatcgaggaaggcggctcgctgaccatcatcgccaccgcgctg
gtcgagaccggctcgaagatggacgaggtcatctacgaagagttcaagggtaccggcaac
atggaactgccgctggaccgtcgcatcgccgagaagcgtgtgttcccggccatcaacatc
aacaagtccggtacccgccgcgaagaactgctgactgccgacgacgagctgcagcgcatg
tggatcctgcgcaagttgctgcacccgatggacgaagtggcggccatcgagttcctcatc
gacaagctcaagcagaccaagaccaacgatgagttcttcctgtcgatgaagcgcaagtaa
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