Pseudomonas parafulva: NJ69_18565
Help
Entry
NJ69_18565 CDS
T03520
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03030
DNA replication
ppv03410
Base excision repair
ppv03420
Nucleotide excision repair
ppv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NJ69_18565
03410 Base excision repair
NJ69_18565
03420 Nucleotide excision repair
NJ69_18565
03440 Homologous recombination
NJ69_18565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppv03032
]
NJ69_18565
03400 DNA repair and recombination proteins [BR:
ppv03400
]
NJ69_18565
Enzymes [BR:
ppv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NJ69_18565
DNA replication proteins [BR:
ppv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NJ69_18565
DNA repair and recombination proteins [BR:
ppv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NJ69_18565
NER (nucleotide excision repair)
GGR (global genome repair) factors
NJ69_18565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
AIZ34862
LinkDB
All DBs
Position
complement(4243240..4245987)
Genome browser
AA seq
915 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRRQYPDALFAVVFD
AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVRALGYPLLCVEGVEADDVIGTLAR
SSAAAGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLRELYENLDKVPSLAIRGAKSLPAKLEEHRDA
AFLSYELATIKIDVELDIAVDALVCGEPDREALLALYTEMEFKSWIADVQRDAAREGASI
EPVEAPAAKVEARYETVLDQARFDVWLDKLRQAPLFAFDTETTGLDAQRAELVGVSFAVE
PHEAAYVPLAHDYEGAPQQLDRDAVLLALKPLLEDPAKAKVGQNAKYDINILANCSQPIE
VRGVAYDTMLESYVLDSTATRHDMDSLAQKYLDHRTIAFEDIAGRGAKQLTFNQIHLDKA
GPYAAEDADITLRLHLALQARLARTPSLQPVLMDIEMPLVPVLAKIERQGALVDAALLKV
QSGELGVKMAELERQAYELAGEPFNLGSPKQLGVILYDKLGMPVLSKTAKGQASTAEAVL
ADLAAEGYPLPTVLMEYRSLSKLKSTYTDKLPEQINPRTGRIHTSYQQAVAATGRLSSSD
PNLQNIPVRTLEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDV
HRATAAEVFGVALEAVTHDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQAQDYIDRYFA
QYPGVLAYMERTRAQAAEQGFVETFFGRRLYLPDINAKNPALRRGAERTAINAPMQGTAA
DIIKRAMVNVDHWLADSGLDARVILQVHDELVLEVREDLVEQVRNEIRPHMSNAAQLDVP
LLVEVGVGANWDEAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcgcccctcgtcctggtggacggttcgtcctacctctaccgcgccttccac
gccctgccgccgctgaccacctccaagggcatgccgaccggcgcggtcaagggcgtgctg
aacatgctcaagagcctgcgccggcagtaccccgacgcgctgttcgcggtggtcttcgac
gccaagggcggcaccttccgtgacgccatgttcgccgaatacaaggccaaccgcccgagc
atgcccgacgacctgcgggtgcaggtcgagccgctgcacgccagcgtgcgggcgcttgga
tacccactgctgtgcgtagagggcgtcgaggccgacgacgtgatcggcaccctggcgcgc
agcagcgcggcggccgggcgcccggtgatcatctccaccggcgacaaggacatggcgcaa
ctggtggacggccacatcacgctggtcaacaccatgaccggcagcgtgctggatgtcgcc
ggcgtgcacgaaaaattcggcgtggggcctgaacacatcatcgacttcctcgccctgatg
ggcgacaaggtcgacaacatccccggtgtccccggcgttggcgaaaaaaccgcggtgggc
ttgctgaccggcatcggtggtggcctgcgcgagctgtacgagaacctcgacaaggtgccg
agcctggccattcgcggcgccaagagcttgccggccaagctcgaagagcaccgtgatgcg
gccttcctctcttacgaactggccaccatcaagatcgatgtcgagctggacatcgccgtg
gacgcgctggtctgcggcgagcctgaccgcgaggccttgctggcgctgtacacggaaatg
gagttcaagagctggatcgccgacgtgcagcgcgacgccgcccgcgaaggcgcttcgatc
gagccggtggaggcgccggcagccaaggtcgaggccaggtacgaaaccgtcctcgaccag
gcgcgcttcgacgtctggctcgacaagctgcgtcaggcaccgctgttcgccttcgacacc
gagaccaccgggctggacgcgcagcgggccgagctggtcggcgtgtcgttcgcggtcgag
ccccatgaggctgcctatgtgccgctggcccacgactacgagggcgcgccgcagcagttg
gaccgtgatgcggtgctgctggcgctcaagccgctgctggaagacccggccaaggccaag
gtcgggcagaacgccaagtacgacatcaacatcctggccaattgcagccagccgatcgag
gtgcgtggtgtggcctacgacaccatgctcgagtcctacgtgctggactccaccgccact
cgccatgacatggacagcctggcccagaagtacctcgaccaccgtaccatcgcattcgag
gacatcgccggacgcggcgccaagcagttgaccttcaaccagatccacctggacaaggca
ggcccctacgcggccgaggacgctgacatcaccctgcggctgcacctggcgctgcaagcc
cgcctggcgcgtacgccgagcctgcagccggtactcatggacatcgagatgccgctggtg
ccggtgctggccaagatcgagcgccaaggcgcgctggtcgacgccgccttgctcaaggtg
caaagcggcgagctgggggtgaagatggccgagctcgagcgccaggcctacgagttggcg
ggcgagccgttcaacctcggctcgcccaagcaactgggggtgattctctacgacaagctg
ggcatgccggtgctgagcaagaccgccaagggtcaggcctccaccgccgaggcggtgctc
gccgacctggccgccgaaggttatccactgccgaccgtgctgatggagtaccgctccctg
agcaagctcaagagcacctacaccgacaagctgcccgaacagatcaacccgcgcaccgga
cgcatccatacctcgtaccagcaggccgtggccgccaccgggcgactgtcctccagcgac
ccgaacctgcagaacatcccggtgcgcacactcgagggccggcgcatccgccaggccttc
gtcgccagtccgggctacaagctgctggcggcggactactcgcagatcgaactgcgtatc
atggcccacctggccaaggacgaaggtctgctgcacgccttccgcaatgacctggacgtg
caccgggctaccgccgccgaagtgttcggcgtggcactggaggcggtcactcacgatcaa
cgacgcagcgccaaggccatcaacttcgggctgatctacggcatgagcgcgttcggtctg
gccaagcagatcggcgtggatcgcaagcaggcgcaagactatatcgaccgctatttcgcc
cagtaccccggcgtgctggcctacatggagcgcacccgcgcccaggcggccgagcagggg
ttcgtcgagaccttcttcggccgccgtctgtacctgccggacatcaacgccaagaacccg
gccctgcgccgtggtgccgagcgcacggcgatcaacgcgccgatgcaagggaccgccgcc
gacatcatcaagcgggccatggtcaacgtcgatcattggctggccgacagcggcctggat
gcgcgggtgatcctgcaggtgcacgacgaactggtgctggaggtgcgcgaggatctggtg
gagcaggtgcgcaacgagattcgtccgcacatgagcaacgcggctcaactggacgtgccg
ttgctggtcgaggtcggtgtcggcgccaactgggacgaagcccactga
DBGET
integrated database retrieval system
