Pseudomonas parafulva: NJ69_19315
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Entry
NJ69_19315 CDS
T03520
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03420
Nucleotide excision repair
ppv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NJ69_19315 (uvrD)
03430 Mismatch repair
NJ69_19315 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppv03400
]
NJ69_19315 (uvrD)
Enzymes [BR:
ppv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NJ69_19315 (uvrD)
DNA repair and recombination proteins [BR:
ppv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NJ69_19315 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NJ69_19315 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_11
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AIZ34999
LinkDB
All DBs
Position
complement(4407047..4409230)
Genome browser
AA seq
727 aa
AA seq
DB search
MHTDDLSLLLNSLNDAQRQAVAAARGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSI
LSVTFTNKAAAEMRHRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLTQNFQILDSD
DQQRLVKRVIREMGLDEQRWPARQAQWFINGQKDEGLRPQHIQPGGDLFLATMRGIYEAY
EQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLA
AGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAELIRLEQNYRSTGGILKAANALI
ANNSGRLGKELWTDLGEGEPITLYAAYNEHDEARYVVESIERVIKDGNSRNDIAILYRSN
AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPPRG
IGEKTVEAIREHARHSQSSMWDAMCQLLAAKALKGRAASALGGFIELMEHLAAKVSEMPL
HTMTQTVIEQSGLIVYHQEEKGEKGQARVENLEELVSAARNFETSEDDGDLSPLSAFLGH
ASLEAGDAQADEHEDSVQLMTLHSAKGLEFPYVFLVGLEEGLFPHKMSLEEPGRLEEERR
LAYVGITRAMRQLIMSYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFGGA
QTQASSLFANAAIPQTAFSLGQRVQHSVFGEGVILNFEGSGAQARVQVNFDEGSKWLMLG
YAKLEAI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcacactgatgacctctccctcctgctcaattccctcaacgatgcccagcgccaggcc
gtagccgctgcgcgtggccgtcagctggtgctggctggcgccggctccggcaagacccgc
gtgctggtgcaccgcatcgcctggctgatccaggtcgagcaggcctcgccgcactccatc
ctgtcggtgacgttcaccaacaaggcggcggccgagatgcgccaccgcatcgagcagttg
ctgggcatcaacccggccggtatgtgggtcggcaccttccacggcctggcgcaccgcctg
ctgcgtgcccattggcaggaagcgcggctgacgcagaacttccagattctcgacagcgac
gaccagcagcgcctggtcaaacgcgtgatccgcgaaatgggtctggacgagcaacgctgg
ccggctcgccaggcccagtggttcatcaacgggcaaaaggacgaaggcctgcgcccgcag
cacatccagccaggcggcgacctgttcctggccaccatgcgtggcatctacgaggcttat
gaacaagcctgcgaacgcgccggtgtcatcgatttctccgagctgctgctgcgcgccctg
gacctgtggcgcgaccaccctggcctgctggagcactatcagcgccgcttccgtcacgtg
ctggtggacgagtttcaggacaccaacgccgtgcagtacgcctggttgcgcctgttggcc
gcaggcggcgacagcctgatggcggtgggtgacgacgaccagtccatctatggctggcgc
ggggccaagatcgagaacatccatcagtacaccgccgacttccccgatgccgagctgatc
cgcctggagcagaactaccgctccaccggcggcatcctcaaagcagccaacgccttgatc
gccaataacagcgggcgtctgggcaaggaactgtggaccgacctgggcgaaggcgaaccc
atcacgctgtatgcggcctacaacgagcacgacgaagcacgctacgtggtcgagagcatc
gagcgcgtgatcaaggacggcaactcacgcaatgacattgccatcctctatcgctccaac
gcccagtcgcgagtgctcgaagaggccctgctgcgcgagcgtattccctaccgcatctat
ggcggccagcgcttcttcgaacgcgccgagatcaagaacgccatggcctacctgcgcctg
ctcgaagggcgcggcaacgacgcagccctggagcgggtcatcaacgtgccgccacgcggt
atcggcgaaaaaaccgtcgaggccatccgcgagcacgctcgccacagccagtcgtcgatg
tgggatgccatgtgccagttgctcgccgccaaagccctcaagggtcgcgcggcaagcgcg
ctgggcggcttcatcgaattgatggagcacctcgcggccaaggttagcgagatgccgctg
cacacgatgacccagaccgtgatcgagcaatccgggctgatcgtctatcaccaggaagag
aaaggcgagaagggccaggcgcgggtggaaaaccttgaggaactggtcagcgccgcgcgc
aacttcgagaccagcgaagacgacggtgacctgtcgccgctgtccgccttcctcggccac
gcgtcgctcgaagccggcgatgcccaggccgatgagcacgaagacagcgtgcaattgatg
accctgcacagtgccaaaggccttgagttcccctatgtgttcctggtcggcctggaagaa
gggctgttcccgcacaagatgagcctggaagagccgggacgtctggaagaagagcgcagg
ctggcgtatgtcggtatcacgcgggccatgcgccagttgatcatgtcctacgccgaaacg
cgccgtctgtatggcagtgagacgtacaacaaggtgtcacgcttcgttcgggaaattccg
gccgggctggttcaggaggtgcgcctgtccaactcggtcagtcgccccttcggcggcgct
cagacccaggccagcagcctgttcgccaatgccgcaatcccgcagaccgccttcagcctc
gggcagcgggttcagcactcggtattcggcgagggcgtgatcctcaacttcgaaggttcc
ggcgcccaggcgcgggtgcaggtgaatttcgacgaaggcagcaaatggttgatgctgggg
tacgccaagctggaagcgatctga
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