Pseudomonas parafulva: NJ69_20330
Help
Entry
NJ69_20330 CDS
T03520
Name
(GenBank) type IV secretion protein Rhs
Organism
ppv
Pseudomonas parafulva
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
PAAR_motif
TEN_YD-shell
Motif
Other DBs
NCBI-ProteinID:
AIZ35181
LinkDB
All DBs
Position
complement(4653799..4658184)
Genome browser
AA seq
1461 aa
AA seq
DB search
MSDAFWAAREGDALMHTSMMADIVGGVLEVAANVAIGALATAAVGAALGITVATGGLGCF
VLGAAVGLVVGVAMAKSGADTGLSRLCDGIGNALFPPSVQAHIATGSGNTHTNGKPAARA
AGIVTGPVGPAADASGQPAGDEPEESFLDMAKGFFSQMWRPTVATPAPNTQEAEDDKILC
DKHPAMPPQYLAEGSSKVLINGHPACRSGDRSTCEAVVVDAGEISSNVRIGGEPIVVREI
RSGKTPGIGLAITALMLLRGRGGKFYSKFGCMLIGGVTQLVTSQVTSALTSAIVGSPNPV
HTPTGAKLLNGEDDHDFDLPALLPITWQRCYNSHGQREDGLLGTGWSVPYEVYIEVRTQA
QGGEGLIFVDEQARAIEMGRIAPGDAVYSAAEGLSVRREHNGEVLIEDRDGRYRLFQPCP
ANPMRLRLSQIGDRNDNRIFLDYDDSGRLRGLRDTFDQTEALLSYDPQWPQRLSQIERRL
TDASVEPLVSYGYDGAGRLAQVKNRHGQVTRRFSYDTGGRMVEHQLPTGLSCYYQWAQTA
DGWRVIRHWTDAGDEYSFEYDLTAGITRVTDGLQRVTTRHWNDQYQITAYTDALGRTWRF
DWNADRQLLGASDPDGGRWSFNYDESGNLSETFDPLGRCVSTQWLEHWALPRSRMDAAGH
CWRYHYDARGNCIRETDPLGQTTHYRYDPHGQVIEITDAAGRAKQLQWTDFGALRALTDC
SGYTTRLDYDHRGHLAALIDAHGERTDYQHDASGRLVQVRLPDGRTQSFDYAVGDRLARH
TDTAGHQRQFQYDARGQLRQLVDPLGRTVEYRYDLYGRLLSLTNENGEQYRFTWDAADRL
VEQRDLDDSAKRYHYDALDCLSRLDYLPGPHGTGLALVSPTPAAVISHFFERDAGCRLLA
KVTDDGRTEYQYDALDQLLQACFTDNQGKRETVAFAFDALGRRTQEQGSNGTLHHRHDAL
GNRLQTWLPDGRTLNQLYYGSGHLHQVNLDGKVICDFERDRLHREVLRIQGGFETRSEYD
RAGRIRSRLSHPRTVPRRLPAPLQQRFEYDLADNLAVRFRQSPEGIVQQHLQHDANERIV
SSSQPHAALPDEVFAYDAAANLLDTPSLGWVRHNRVLTYQDKRYRYDAFGRLIEKRSARR
GLQRFAYDAEHRLIEVRSHNNGRERIVRMTYDPLGRRIEKSEHDETGRQLGLSRFGWDGY
RLLEEVRHGQHSLYLYDDQDSHEPLARVEGVGAHQRVHHYQNDLNGLPERLSDDTGQLLW
QAQYQVWGNTVQEVRQDGLVQEQNLRMQGQYLDRETGLHYNTFRYYDPDIGRFTQPDPIG
LAGGLNLYQYAPTPATWIDPLGLEVCRLNKEDMAKLDETKPTNMVRPHRHHIVREYAPRN
WKQENRDYILNAQAIMRKHKIDLNTDLRNFTWAENGRGTHSVASARKVYERLQEVDAKGT
PAVERALAELGEAFRRGPINK
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgcattctgggccgcgcgcgagggtgacgcgttgatgcacacctcgatgatg
gccgatatcgtcgggggcgtgctggaagtggcagccaacgtggcgatcggcgcactggcc
accgcggccgttggcgcagcgctgggcatcaccgtggctaccggtggactgggctgcttc
gtgctgggtgccgcagtcggcctggtggtcggcgtggccatggccaagagcggtgccgat
accggcctgagccgattatgcgacggcatcggcaacgcgcttttcccgccttcggtgcag
gcgcacatcgccaccggctcgggcaacacccacaccaacggcaagcctgccgcccgtgca
gcaggcatcgtcaccgggccggtggggccggcagcggacgcctccggccaaccagcgggc
gatgagccggaagaaagcttcctggacatggccaagggcttcttctcccaaatgtggcgg
ccgaccgtggcgacaccggcgcccaatacccaggaagcggaagacgacaagatcctctgc
gacaaacatccggcgatgccgccgcaatatctggccgaaggctccagcaaggtgctcatc
aacggccacccggcctgccgtagtggcgatcgcagcacctgcgaggcggtagtggtggac
gctggcgagatttccagcaacgtgcgcatcggcggcgagcccatcgtggtgcgcgagatc
cgcagcggcaagacgcccggcatcggcctggcgatcaccgcgctgatgctgctgcgcggg
cgcggcggcaagttctacagcaagttcggctgcatgctcatcggtggcgtcactcagctg
gtcaccagccaggtcaccagcgccctcacctcggccatcgtcggctcgcccaacccggtg
catacaccgactggcgccaagctgctcaacggtgaggacgatcacgacttcgacctgccg
gccctgctgcccatcacctggcagcgctgctacaacagccatggacagcgcgaggacggg
ctgctgggcaccggctggagcgtgccgtacgaggtctacatcgaagtcaggacgcaagcg
caaggtggcgaagggctaatcttcgtcgacgagcaggccagggccatcgaaatgggccgt
atcgcgccaggcgatgcggtctacagcgctgccgagggcctgagtgtgcgccgcgaacac
aacggcgaggtgttgatcgaggatcgcgacggccgctaccggttgttccagccctgcccc
gccaaccccatgcgtctgcgcctgagccagatcggtgatcgcaacgacaaccgtatcttt
ctggattacgacgacagcgggcgactgcgtgggctacgcgataccttcgatcagacagaa
gcgctcttgagctacgacccgcaatggccgcagcgcctgagccagatcgagcggcgcctg
accgacgcgagcgtcgagccactggtgagctacggctacgacggcgctggtcgcctcgcg
caggtcaagaatcgccacgggcaggtcacgcgccgcttcagctacgacactggcggacgc
atggtcgagcaccaactgcccaccggtttgagttgctactaccaatgggcgcagacggcg
gatggctggcgagtgattcgtcactggacggatgcaggtgatgagtacagcttcgagtac
gacctgacagcgggcatcacacgcgtcaccgacggactgcaacgggtcaccacacgccac
tggaacgaccagtaccagatcacggcctacaccgacgccttggggcgcacctggcgtttc
gactggaacgcagaccggcaactgctcggcgccagcgacccggacggcggacgctggtcg
ttcaactacgacgagtccggcaacctcagcgagaccttcgaccctctgggccgctgcgtg
tcgacgcagtggctggagcattgggcgctgccccgctcacgcatggacgccgccggccac
tgctggcgataccactacgatgcccgtggcaactgcatccgcgagaccgatccgctcggc
cagacgacccactaccggtatgacccacacggtcaggtgatcgaaataaccgatgctgcg
ggtcgggccaagcagttgcagtggaccgacttcggcgccctgcgtgccctgaccgactgc
tccggctacaccacgcgtctggattacgaccaccgaggtcatctggcagcgctcatcgac
gcccacggcgaacgtaccgactaccagcacgatgcgtccggacgactggtgcaggtgcgc
ctgcccgacggccgcactcaatctttcgactatgccgtgggcgaccggctggctcgtcat
accgacactgccggccatcagcgtcagttccagtacgatgcgcgcggccagttgcggcag
ttggtcgatcccttgggccgtaccgtggagtaccgctacgacctgtacggccgattgctc
agcctgaccaacgaaaatggcgagcagtaccgcttcacctgggatgccgccgatcgtctg
gtcgagcagcgggacctggacgacagcgccaaacgctatcactacgacgctctcgactgc
ctctcgcggctcgactacctgcccggaccgcacgggaccggcctggcgctggtgtccccg
acgccagcggccgtgatcagccatttcttcgagcgtgatgctggctgccggctgctggcc
aaggtgaccgacgatggccgtacggagtaccagtacgacgccctagaccaactgctgcag
gcctgcttcaccgacaaccaaggcaagcgcgagaccgtcgcgttcgctttcgatgccctc
ggccggcggacccaggagcagggcagcaatggaacccttcatcaccgccatgacgcactg
ggcaatcgcctgcagacctggctgccggatgggcgtacgctcaaccagctgtactacggc
agcggccatctgcatcaggtcaacctggacggcaaggtcatctgcgatttcgagcgcgac
cgcctgcaccgtgaggtgctgcgcattcagggcgggttcgagacgcgcagcgagtacgat
cgcgccggccgcattcgctcgcgcctgagccacccccgaacagtaccccgacgtctgccc
gcaccgttgcagcaacgcttcgagtacgacctggcggacaacctggccgtgcgctttcgg
cagagtcccgagggtatcgtccagcaacacctgcaacacgatgccaacgagcgaatcgtc
agtagcagccagccccatgctgcgctgcccgacgaagtcttcgcctacgatgcagccgcc
aacctgctcgatacgccgtcgctgggctgggtacggcataaccgcgtgctcacctatcag
gacaagcgctatcgctacgatgccttcggcaggctgatcgaaaagcgcagcgccaggcgt
ggcctacagcgtttcgcctacgacgccgaacaccgcctgatcgaggtgcgcagccacaac
aacggccgcgagcggatcgtgcgcatgacttacgaccctctgggccggcgtatcgaaaaa
agtgaacacgacgagacgggacgccagttgggcctttcgcgtttcggctgggatggctat
cgcctgctggaggaagtccggcatggccagcacagcctttacctctatgacgaccaggac
agccatgagcctctggcgcgcgttgaaggtgtaggcgctcaccagcgggtgcatcactac
cagaatgacctgaatggcctgccggaacgcctgagcgacgacaccggccaattactgtgg
caggcccagtaccaggtgtggggcaataccgtccaggaagttcgccaggacggcttggtc
caggagcagaacctgcgcatgcagggtcaatacctggatcgcgaaaccggcctgcactac
aacaccttccgctactacgacccggatatcggccgtttcacacagcccgatccgattggt
ctggcgggcggcttgaatctctatcagtacgctccgacaccggcaacctggatcgatccg
ctagggttggaggtctgcaggctgaataaagaggacatggcgaagctggatgagaccaaa
ccgaccaacatggtccggccacatcgccatcatatcgttcgcgagtatgcaccgaggaac
tggaagcaggaaaatcgcgactacatcctcaatgcccaggcgatcatgaggaagcacaag
atcgacctgaatacggacttgaggaatttcacctgggcggagaatggccgtgggacgcac
agcgtcgcttcggccaggaaagtctacgagcgcctgcaggaagtcgacgcaaaagggacg
ccggctgtagagcgagcactcgccgaattgggcgaagccttcagaaggggaccgatcaac
aaatga
DBGET
integrated database retrieval system
