Pseudomonas parafulva: NJ69_20945
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Entry
NJ69_20945 CDS
T03520
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NJ69_20945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppv03019
]
NJ69_20945
Enzymes [BR:
ppv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NJ69_20945
Messenger RNA biogenesis [BR:
ppv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NJ69_20945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIZ35287
LinkDB
All DBs
Position
complement(4802703..4804613)
Genome browser
AA seq
636 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPDGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLHFVSACIFGGVGMN
PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSKVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLAASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANTV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTRQKIADGDLMGFDASQVEAEKPEVRERQPNAGRGGRNQPRGEGSKDGSGGRK
DKGKDKGRAKSQAAEKPADKDASADKSQARKQEPRKPRDNRKPRQQQAGQGQTSAPKAPA
DRDPEEFLDDDVDNFGNRADYVSPYQNGKGQGRNRRPGGGGQAQGQGQQRAGSGQPRSNN
GGGAQRQGGQGGGQGAGDKRPRNNNGGARRDGNPGRGRREDSARQEPAVRNPRESQSAPV
IIRKESKLDRYPTPEQLEDVPSRPRGERPALLTRKG
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggcacttgtccgcgctatcgaggctgcgggc
tacacccagcccaccccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgccgcgcagacaggtactggtaaaaccggtggcttcgccctgccgatcctc
gagcgtctgttcccggatggccatcccgacaaatcccagcgtcacggcccacgccaaccg
cgcgtgctggtcctgaccccgacccgcgaactggcggcgcaagtccacgacagtttcaag
ctctacgctcgcgacctgcatttcgtcagcgcctgcatctttggcggcgtcggcatgaac
ccgcaggtccaggccatggccaagggcgtcgatgtcctggtcgcctgcccgggccgcctg
ctcgacctggccggccaaggcagcgtcgacctgtcgaaggtcgaaatcctggtgctcgat
gaagctgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtgctggcccgc
ctgccggccaagcgccagaacctgctgttctcggccaccttctccaaagacatcaccgac
ctggccgacaagctgctgcacaaccccgagcgcatcgaggtcacgccgccgaacaccacc
gtcgagcgcatcgagcaacgcgtctatcgcctggccgccagccacaagcgcgcgctgctg
gcgcacttgatcaccctcggtgcctgggaacaggtgctggtgttcacccgtaccaagcac
ggcgccaaccgtctggccgagtacctggaaaagcacggcctgaccgctgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccaataccgta
cgtgtactggtcgccaccgacatcgccgcccgcggcctggacatcgatcagttgccgcac
gtggtcaacttcgagctgcccaacgtcgaggaagactacgtccaccgtattggccgtacc
ggccgcgccggccgctccggtgaagcgatctcgctggtcgcgccggacgaggaaaagctg
ctcaagagcatcgagcgcgtcactcggcagaagatcgccgatggcgacctgatgggcttc
gatgcctcgcaagtggaagccgagaagcccgaggtgcgcgagcgccagccgaacgccggt
cgcggcggtcgcaatcagccgcgtggcgaaggcagcaaggacggcagtggcgggcgcaag
gacaaaggcaaggacaaaggtcgggccaagtcccaggccgccgagaagcctgccgacaaa
gacgcctctgccgacaagtcgcaggccaggaagcaggagccgcgcaagccgcgcgacaat
cgcaagcctcgtcaacagcaggccggccagggccagaccagcgcgcccaaggcgcctgcc
gaccgcgacccggaagagttcctggacgatgacgtagacaactttggtaaccgcgccgac
tacgtcagcccgtaccagaacggcaagggccagggccgcaatcgccgtcccggcggcggt
ggacaggcgcaaggccaaggccagcagcgggcaggctccggccagccgcgcagcaacaac
ggcggcggtgctcagcgccaaggtggtcaaggtggcggtcagggcgcaggcgacaagcgt
cctcgcaacaacaacggtggcgcgcgtcgtgacggtaatccgggacgtggtcgtcgtgaa
gacagcgcgcgccaggaaccggccgtgcgcaacccgcgcgaatcgcagtcggcgcctgtg
atcatccgcaaggaatccaagctcgaccgttacccaacgcctgagcaattggaagacgtg
ccgagccgcccacggggcgagcgtccggcactgctgacccgcaagggctga
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