Pseudomonas parafulva: NJ69_21130
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Entry
NJ69_21130 CDS
T03520
Name
(GenBank) RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
ppv
Pseudomonas parafulva
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppv03009
]
NJ69_21130
Enzymes [BR:
ppv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NJ69_21130
Ribosome biogenesis [BR:
ppv03009
]
Prokaryotic type
rRNA helicases
NJ69_21130
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GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
Cas3-like_C_2
SBP_bac_3
CMS1
Motif
Other DBs
NCBI-ProteinID:
AIZ35321
LinkDB
All DBs
Position
complement(4848075..4849460)
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AA seq
461 aa
AA seq
DB search
MTTDSTAFASLPLSAAMLANLDALGYAAMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAF
GIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIA
SLEHGAHIIVGTPGRIQQHLDKGTLDLKGLNTLVLDEADRMLDMGFFDAIAAIIGKTPSR
RQTLLFSATYPAGIEQLAADFMRTPQQVKVESQHSDSQIEQRFIEIDPQQRLEAVTRVLG
HYRPQSCVAFCFTKQQCEDLVIHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA
TDVAARGLDIDGLDLVINVELARDAEIHVHRVGRTGRAGEKGMAISLVAPAEGHRAQAIE
DLQKRPLRWEPLDGLKHKGGEPLLPPMTTLCIGAGRKDKLRPGDILGALTGDAGLPGKQV
GKIAIFDFVAFVAVERAVAKRAMQRLNSGKIKGRALKVRII
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgactccaccgctttcgcttccctgccgctgtccgccgccatgctggccaac
ctggatgccctgggttatgccgcgatgaccccgatccaggcgcagagcctgccggtcatc
ctcaagggccaggacctgatcgcccaggccaagaccggcagcggcaagaccgccgccttc
ggcatcggcctgctcaacccgatcaacccgcgctacttcggctgccaggcgctggtgctg
tgccccacccgcgagctcgccgaccaggtggccaaggaactgcgccgcctggccagggcc
gaggacaacatcaagatcctcaccctgtgcggcggcgtctcgctcggcccgcagatcgcc
tcgctggaacacggcgcgcacatcatcgtcggcaccccagggcgcatccagcagcacctg
gacaagggcaccctcgacctcaagggcctcaacacgctggtgctggacgaagccgaccgc
atgctcgacatgggcttcttcgacgccatcgccgcgatcatcggcaagaccccctcgcgg
cgccagaccctgctgttctcggccacctacccggccggcatcgagcaactggccgccgac
ttcatgcgcacgccgcagcaggtcaaggtcgagagccagcacagcgacagccagatcgag
cagcgcttcatcgagatcgatccacagcagcgcctggaggcggtcacccgcgtgctcggt
cactaccgtccgcagtcgtgcgtggcgttctgcttcaccaagcagcagtgcgaagacctg
gttatccacctgaccgccaagggcatcgtcgcccaggccctgcacggcgacctggaacag
cgcgaccgcgatcaggtgctgacgatgttcgccaaccgcagcagctcggtgctggtggcc
accgatgtggccgctcgcggcctggacatcgatggcctggacctggtgatcaacgtcgaa
ctggcgcgcgacgccgagattcacgtgcaccgcgtcggacgtaccggccgcgccggtgag
aaagggatggcgatcagcctggtggcgccggccgaaggccatcgcgcccaggccatcgag
gacttgcagaagcgcccgttgcgctgggaaccgctggacggcctcaagcacaagggtggc
gagcccctgctgccgccgatgaccaccctgtgcatcggtgccgggcgcaaggacaagctg
cgcccaggcgacatcctcggtgcgctgaccggcgacgccgggctgccgggcaagcaagtg
ggcaagatcgccatcttcgacttcgtcgccttcgtggcggtggagcgggcggtggccaag
cgggcgatgcagcggctcaacagcggcaagatcaagggccgcgcgctcaaggtccgcatc
atctaa
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