Pseudomonas putida W619: PputW619_0340
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Entry
PputW619_0340 CDS
T00675
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppw
Pseudomonas putida W619
Pathway
ppw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PputW619_0340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppw03400
]
PputW619_0340
Enzymes [BR:
ppw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PputW619_0340
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PputW619_0340
DNA repair and recombination proteins [BR:
ppw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PputW619_0340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ACA70846
UniProt:
B1J2M4
LinkDB
All DBs
Position
359498..360310
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVVVRDRRLRWPIPEDLDVRLSGQRILSVERRAKYL
LINAEVGTLISHLGMSGNLRLVQLGLPAAKHEHVDIELESGLMLRYTDPRRFGAMLWSLD
PLNHELLLRLGPEPLTDLFDGERLFQLSRGRTMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGGISRTRYLKLAIEIKRVLAAAIEQGGTTLRDFIGGDGQPGYFQQELFVYGR
GGMPCKLCGTTLREAKLGQRASVYCPRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattacccgaagtagagaccacgcggcgtggtatcgcgccgcacctggaaggc
cagcgggtcagccgcgtggtggtgagagaccggcgcttgcgctggccaatcccggaggac
ctggacgtgcgtttgtccgggcagcgtattctcagcgtcgagcggcgcgccaaatacctg
ctgatcaatgccgaggtcggcaccttgatcagccatctgggcatgtcgggcaacctgcgt
ctggtgcagctggggctaccggcggccaagcatgagcacgtcgatatcgaactggagtcg
gggctgatgctgcgctacaccgacccacgtcgtttcggtgccatgctctggagccttgat
ccgctcaatcacgagctgctcctgcgtctgggcccagagccgttgaccgacctgttcgac
ggcgagcgcctgtttcagctgtcgcgtgggcggacgatggccgtcaagcctttcatcatg
gataacgcggtggtggtgggcgtgggcaatatctacgcgaccgaggcgctgtttgccgcc
ggtatcgacccacgccgtgaggcgggcggaatctcccgtacccgttacctgaaactggcc
atcgagatcaagcgcgtgctggcggcagccatcgagcaagggggcacgaccttgcgcgat
ttcattggcggcgacggacagccgggttatttccagcaggaactattcgtgtacggccgg
ggcgggatgccttgcaagctgtgcggcactaccttgcgtgaggccaagcttgggcagcgg
gccagcgtttactgcccgcgttgccagcgttga
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