Pseudomonas putida W619: PputW619_0485
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Entry
PputW619_0485 CDS
T00675
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppw
Pseudomonas putida W619
Pathway
ppw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PputW619_0485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppw03019
]
PputW619_0485
Enzymes [BR:
ppw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PputW619_0485
Messenger RNA biogenesis [BR:
ppw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PputW619_0485
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACA70990
UniProt:
B1J2Y4
LinkDB
All DBs
Position
complement(531400..533292)
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AA seq
630 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGRVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTRQKIADGDLMGFDPSQVEAEKPEVRERPQNNGRGGRNQQARGDGGKDGSGGR
KDKGKDKGKAKQQAADKPADKEKSADKQQPRKPRDKKPRQQQASQNSVPKAPADRAPDEF
LDDEIDNFGNRADYVSPYQNAKNQGRNRRPGASAGAGQGQASPGRSNSGGGQGRNGGQPR
NASGEKRPPRNNKGGDARRDSNGGGRNRSAGRDDASRQEPAVRSSREPQNQPVIIRKESK
LDRFPTPEQLDDLPSRPRGERPALLTRKGG
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggcacttgtccgcgctatcgaggctgcgggc
tatacccagccgactccggtgcaacagcgggcgattcccgccgtgttgcaaggccgcgac
ctgatggtcgccgcacagacaggtacaggtaaaaccggcggtttcgccctaccgatcctt
gagcgcctgttcccggcgggtcacccggacaaatcacagcgccatggcccgcgccaaccg
cgcgtgctggtcctgaccccgacccgcgaactggcggctcaggtacacgacagcttcaag
gtttacgctcgcgacctgccactggtcagtgcctgcattttcggcggcgttggcatgaac
ccgcagatccaggccattgccaaaggtgtagatgttctggtggcctgtccgggtcgcctg
cttgacttggcagggcaaggccgggtcgacttggcccacgtggaaatcctggtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtcctcgcccgc
ctgccggccaaacggcagaacctgctgttctcggcgacgttctccaaagacatcaccgac
ctcgccgacaagctcctgcacaacccggagcgcatcgaggtcaccccgccgaacactacc
gtcgagcgtatcgagcagcgcgtctaccgcctgcccgccagccacaagcgcgcgctgctg
gcccacctgatcacgcttggcgcctgggagcaggtactggtattcacccgtaccaagcac
ggtgccaaccgtctggccgagtacctggaaaagcacggtctgagcgccgctgccatccac
ggcaacaagagccagaacgctcgtacaaaggccttggccgacttcaaggccaacagcgta
cgcgtactggtcgccaccgacattgctgcccgtggcctggacatcgaccaactgccgcat
gtagtcaacttcgagctgcccaatgtcgaggaagactacgttcaccgtatcggccgcacc
ggccgtgccggccgctcgggcgaggccatttcgctggtcgcgccggatgaagaaaagctg
ctcaagagcattgagcgggtcaccaggcagaagatcgccgacggcgacctgatgggcttc
gacccaagccaggtagaagccgagaaacctgaggtgcgtgaacgcccgcagaacaacggt
cgcggcggccgcaatcagcaggcccgtggtgacggtggcaaagatggcagtggcggccgc
aaggacaagggcaaagataaaggcaaggccaagcagcaggctgccgacaagcctgccgac
aaggaaaagtccgccgacaagcagcagccgcgcaagccgcgcgacaagaagccgcgccaa
cagcaagccagccagaacagtgtgccgaaggcaccggccgaccgtgctccggatgaattc
ctggacgacgaaatcgacaacttcggtaaccgtgccgactacgtcagcccctaccagaat
gccaagaaccagggccgcaaccgtcgcccgggtgctagtgccggagccggtcaaggccaa
gccagccctgggcgcagcaacagtggtggtggccaagggcgtaacggcggccagccgcgc
aacgccagtggcgagaaacgcccgccgcgcaacaacaagggtggtgatgcgcgccgcgat
agcaacggtggcggccgcaaccgttcggccggccgtgatgacgcatcccgtcaggaaccg
gcagtacgtagctcgcgagagccgcaaaaccagcctgtgatcattcgcaaggagtccaag
ctcgaccgtttcccaacgcctgagcaactggacgatctgccaagccgaccacgcggtgaa
cggcctgcgttactgacccgcaagggcggctga
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integrated database retrieval system
