Pseudomonas putida W619: PputW619_0513
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Entry
PputW619_0513 CDS
T00675
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
ppw
Pseudomonas putida W619
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppw03009
]
PputW619_0513
Enzymes [BR:
ppw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PputW619_0513
Ribosome biogenesis [BR:
ppw03009
]
Prokaryotic type
rRNA helicases
PputW619_0513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
SBP_bac_3
TraP
Motif
Other DBs
NCBI-ProteinID:
ACA71018
UniProt:
B1J312
LinkDB
All DBs
Position
complement(562469..563854)
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AA seq
461 aa
AA seq
DB search
MTTETTAFATLPLSAAMLANLDALGYASMTPIQAQSLPVILRGQDLIAQAKTGSGKTAAF
GIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIA
SLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSR
RQTLLFSATYPAGIEQLAADFMRKPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLG
HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA
TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIE
ALQKSPLRWDQLDSLKNKGGELLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQV
GKIAIFDFQAFVAVERALAKQAMQRLNSGKIKGRALKVRIL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgaaaccaccgcttttgccaccttgccgctgtccgccgccatgctggccaac
ctggacgccctcggctatgcctcgatgacgccgatccaggcccagagcctgcccgtcatc
ctcaggggccaggacctgattgcccaggccaagaccggcagcggcaagaccgccgccttc
ggcatcggcctgctcaacccgatcaacccgcgctacttcggttgccaggcactggtactg
tgccccacccgcgagcttgccgaccaggttgccaaagagctgcgccgcctggcccgcgcc
gaagacaacatcaagatcctcaccctgtgcggtggcgtctcgcttggcccgcagatcgct
tcgctggagcatggcgcgcacatcatcgtcggcaccccagggcgcatccagcaacacctg
gacaaaggcaccctggtgctcgacgggctcaataccctggtgctggacgaagccgaccgt
atgctcgacatgggctttttcgacgctatcgccagcatcatcggcaagaccccgtcgcgc
cgccagaccctgctgttctcggccacttaccccgccggtatcgagcaactggccgccgac
ttcatgcgcaagccgcagcaggtcaaggtcgagagcctgcacaccgacaaccagatcgaa
cagcgcttcatcgagatcgacccgcaacagcgcctggaggccgtcacccgcgtgctcggc
cactaccgcccgcagtcctgcgtggcgttctgcttcaccaagcagcagtgcgaggacgtg
gttgcccacctcaccgccaagggcatcgtggcccaggccctgcacggcgacctcgagcag
cgcgaccgcgaccaggtgctgaccatgttcgccaaccgcagcagttcggtgctggtggcc
actgatgtggccgcacgcggtctggatatcgatggcctggacatggtcatcaacgtggag
ctggcgcgcgatgccgagatccacgtgcaccgcgtcggccgtaccggtcgggcgggcgag
aaaggcattgccgtgagcctggtcgctccggctgaaggccatcgcgcccaggccatcgag
gcgctgcagaagagtccgctgcgctgggaccagctggacagcctgaagaacaaaggtggc
gaactgctgctgccggtcatgaccacgctatgcatcgccgctggtcgcaaggacaagctg
cgcccgggagacatcctgggtgcgctgaccggtgatgccggcatcccgggcaagcaggtg
ggcaagatcgccatcttcgacttccaggccttcgtggcggtggagcgggccctggccaag
caggcgatgcagcgcctgaacagcggcaagatcaagggccgcgccctgaaagttcgcatt
ctctga
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