Pseudomonas putida W619: PputW619_0648
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Entry
PputW619_0648 CDS
T00675
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppw
Pseudomonas putida W619
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppw03019
]
PputW619_0648
Enzymes [BR:
ppw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PputW619_0648
Messenger RNA biogenesis [BR:
ppw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PputW619_0648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
AAA_30
Flavi_DEAD
Cas3-like_C_2
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACA71153
UniProt:
B1J222
LinkDB
All DBs
Position
704371..706899
Genome browser
AA seq
842 aa
AA seq
DB search
MISLPIDAALPALRHALENRHEAVLEAPPGAGKTTRVPLALLNEPWLAGQTIVMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQADPALEGVGL
LIFDEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVISSE
GRMYPVDIRWGRPFQPGEFIEPRVVDSVLQALADQPGSVLVFLPGQAEIRRVHQRLQESL
AERPDILLCPLHGELDLNAQRAAIDPAPQGLRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSETQHDQLAAHGSAEILQ
ADLAGLALQLGRWGVAPDQLRWLDQPPAAAFSQAQDLLARLGAFKLGSRDNLSEHGQAMA
ELPAHPRIAHLLLRGQDLGLAAMACDVAALLGERDIQRAGGADLHSRLALISGDSKVSRD
AQGGVQRARQLARQYRGLLRGKARAGVADPEHPRWLGALLALAYPDRVAQQRREGGAEYR
LANGRAALFAEADALMKCPWLVIADLGSRQGQREERIYLAAEFDPALLDDVLAEQVERVD
ILDWDEREQVLRAERQTKVGELVLSREPLPGLDDDARARALLGLVRRKGLNLLSWTPELR
QWQARIALLRQLDLEKDGHSEWPDLSDEALLASLEHWLQPYLGKVSRLSHFAALDLPSIL
RNLLPWPLPQRLDEWAPAHLAVPSGSSIRLDYSENPPILAVRLQELFGLADTPRIAQGRQ
QVKLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPR
GT
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgatttccttaccaatcgatgctgccctgccggctttgcgccatgccttggaaaaccgt
cacgaagcggtgctcgaggcgccgcccggcgcaggcaagactacccgtgtaccgctggca
ctgttgaatgaaccctggttggccgggcaaaccatcgtgatgctggagccgcgcaggttg
gcggcgcgtgcggcggcagaacggctggccagtgagctgggcgagaaagtcggtgaaacg
gtgggttaccgcattcgcctggacagcaaggtcgggcccaatacccgtatcgaagtggtc
accgaaggcatcctgacccgccggttgcaggcagaccctgcgctggagggcgtagggctg
ctgatcttcgatgagtttcacgagcgtagcctggatgccgacctggccttggcgctgagt
ctcaatggccgggagctgctgcgcgacgatccgccgctgaaaattctgctgatgtccgca
accctggagggcgagcgcctgtcccgcctgctcgacgacgcgccggtgatcagcagcgaa
ggccgcatgtacccggttgatattcgttggggccggccgttccagccaggggaattcatc
gagccgcgggtggtggacagcgtgctgcaggccttggccgatcaacccggcagtgtgctg
gtgttcctccccggccaggctgagatccgcagggttcaccaacgtttgcaggaatcattg
gccgagcgcccggacattctgctgtgccccttgcatggcgaactcgacctcaatgcccag
cgtgcggccatcgatccggcgccccagggcctgcgcaaggtcgttctggccacaaacatc
gccgagaccagcctgaccatcgacggtgtgcgcgtggtcatcgatgccggccttgcccgg
gtaccgcgtttcgaccccggcagcggcatgacgcgcctggacacccagcgtatctcccgt
gccagcgccacccagcgggctggccgtgcggggcgcctggaaccgggcgtttgctaccgc
ctgtggtcagagacccagcacgaccagttggcagcacatggcagtgccgaaatcctccag
gcagacctggcgggcctggcgttgcagcttggtcgatggggtgttgcgcctgaccagttg
cgctggctggaccagcctccagcggcggcattttcccaggcgcaggacctgctggcgcgg
cttggcgctttcaagctgggcagccgcgataacctcagtgaacacggccaggccatggcc
gagcttccggctcacccgcgtatcgctcacctgctgctgcgcggccaggatctgggcttg
gccgcgatggcctgcgatgttgccgccttgttgggcgagcgcgatatccagcgcgcaggt
ggcgccgacctgcatagccggctggcactgatcagcggcgacagcaaggtcagccgtgac
gcccagggaggtgtgcagcgtgcccggcagttggcccgccagtaccgggggctgctgcgc
ggcaaggccagggcgggggttgccgatcccgagcatccacgctggctcggcgccctgctg
gcgttggcctatcccgaccgggttgcccagcagcgtcgcgaaggcggggccgagtaccgc
ctggccaacggccgtgctgctttgttcgccgaggccgatgcgctgatgaaatgcccgtgg
ttggtcatcgccgacctgggcagccgccaggggcagcgggaggagcggatttacctggct
gccgaattcgacccggcgctgctcgacgatgtgctggccgaacaggtcgagcgcgtcgac
attctcgactgggacgagcgcgagcaggtgttgcgtgccgagcgtcagaccaaggtcggc
gaactggtgctcagccgtgaaccgttgcctgggctggatgacgacgcccgcgccagggca
ctgctaggcttggtgcggcgcaaaggcctgaacctgctgagctggacgccagagctacgc
cagtggcaggcgcgcatagcgctattacgccagctagacctggaaaaagacggccatagc
gagtggcccgacctaagcgacgaggcgctactggccagcctggagcactggctgcagcct
tatctgggcaaagtgtcccggctgagccatttcgccgccctggacctgccttcgatcttg
cgtaatctgttgccctggccgctgccccagcgcctggacgaatgggcgccagcgcacctg
gctgtgccgtcgggctccagtatccgcctcgactacagtgaaaacccgccgatcctcgcc
gtgcgcctgcaagagctgttcggcctggctgacacaccgcgcatcgcccaaggtcgccag
caggtcaagctgcatctgctgtcgccagcgcggcggccagtgcaggtgacgcaggacttg
gccagcttctggcgcaccacctatgcagaggtgaagaaggacctcaagggtagatacccc
aagcattactggccggacgacccgctggtggctgaggccaccgcgcgggcaaaaccgcgt
ggcacctga
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