Pseudomonas putida W619: PputW619_0761
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Entry
PputW619_0761 CDS
T00675
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ppw
Pseudomonas putida W619
Pathway
ppw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PputW619_0761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppw03400
]
PputW619_0761
Enzymes [BR:
ppw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PputW619_0761
DNA repair and recombination proteins [BR:
ppw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PputW619_0761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACA71266
UniProt:
B1J3Q6
LinkDB
All DBs
Position
848468..852139
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AA seq
1223 aa
AA seq
DB search
MTQVRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQAFGRELLPPQILVV
TFTDAATKELRERIRARLAEAARFFRGELQEADPLLHQLRDDYPQEHWPRCANRLEIAVQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFTQSLETDHSDLLGQVMRDYWRRFCYGMHGEA
LGWVRSHWGSPDALLPRIRPLFGRLRAQQDEQEPQALIDAALQQRADQLYQLKAPWVQWA
EQLQQICRDAVAAKLADGRKLQARFFEPWFDKLRAWAADEQTVELDLGTGFTRLTPAGMA
EAWKAGEPPDHPALHAMQDLPQQLQALASPDARLLEHAAAWVSARFEVEKRRRAEMGFDD
MLLRLQHALASEAGERLAGLIREQFPVALIDEFQDTDPVQYGIFERIYRISENREETGLF
MIGDPKQAIYAFRGADIYTYLSARRATAGRLHSLDTNYRSSEAMVAAVNQVFLQAEARDQ
GRGAFLFRENDDNPLPFIEVRAKGRSERLLIDGQAIAALQCWQLESDEPVSSTLYRQQLA
ASCASHIVALLNSAQRGLSGFSKADGELRPCLPSDIAILVRDGHEAQLVRSELASRDVRS
VYLSDKDSVFAAQEALDLLAWLKACAEPDSERLLKAALASLTLELSLAELDQLNQDERVW
EDWVMRFRRYRDTWQRQGVLPMLRHLLHDFQLPRRLIARSDGERVLTNLLHLAELLQQAA
GELDGEQALIRHLAEHLANAGQAGEDQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFIC
TSKPVDGSRLPLAWHDSQGNAQLTLTPDPAQITLADDERLAEDLRLLYVALTRAQHACWL
GVADLKRGNQKSSQLHRSALGYLLGGGVQLQGSAQLTDWLQNLLAGCPHIACPGLPEADE
ERYRSPHAERELLPARKPRRTAAEHWWIASYSALRVGEQTLGADSSQAQQLLDDEGGDAQ
LPREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFAEVAANPKLIERTVGQRCNRRDW
TGWIPTLSQWLQQLLNEPLPARDMSLTLAQLQHYQIEMEFWFASHQVDAEQLDRLVARHT
HPGAARPAAQPTLLNGMFKGFIDLAFELDGRYFVADYKSNWLGPDIQAYDTLAMEKAILE
HRYDLQYVLYLLALHRQLRARLPEYDYDRHVGGALFIFLRAASSSGHGVYFVKPPRELIE
ALDALFRGVHAPQQQDLFAGAAP
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggtccgtcccctggcactgagtttccccctgcacggcagccaactgatcgaa
gccagtgccggtaccggcaagacgttcacgatttcagcgctttacctgcggctgatcctc
ggtcatggcggcgagcaagcttttggccgcgagttgctgccaccgcagatcctcgtggtg
acttttactgatgcggccaccaaggaattgcgcgagcgtattcgcgcgcgcctggccgaa
gccgcacgcttctttcgcggcgagctgcaggaagccgacccgctgctgcaccagctacgt
gacgattacccacaggagcactggccccgctgcgccaaccgcctggagatcgccgtacag
tggatggatgaagcggcagtctcgaccattcatggctggtgccagcgtatgcttcgcgag
cacgccttcgacagcggcagccttttcacccagagcctggaaaccgaccacagcgacctg
cttggccaggtcatgcgcgactattggcgtcgtttctgctacggcatgcacggcgaggcc
ttaggctgggttcgtagccattggggcagccccgatgcactgttgcccaggatccgcccc
ctgtttggtcgcttgcgtgcgcagcaggatgagcaagaaccgcaagcgctgatcgatgca
gcactgcagcagcgcgccgatcagctgtaccaacttaaagccccatgggtgcaatgggcc
gagcagctgcaacagatctgccgggacgccgtcgccgctaagctggccgacgggcgcaaa
ctgcaggcgcggttcttcgaaccctggttcgacaaattacgcgcctgggctgcagatgag
cagacagtggaacttgaccttgggactggcttcactcgcctgactccagcaggcatggct
gaagcctggaaggccggtgagcctccagatcacccggccctgcatgccatgcaagacctg
ccacaacagctgcaggctctggcaagccctgatgcacgcctgcttgagcacgccgccgcc
tgggtttcggcgcgcttcgaggtggaaaagcgccgccgcgctgaaatgggcttcgatgac
atgctgctgcgcctgcaacatgcgttggccagtgaagccggcgagagattggcaggcctg
attcgcgaacagttccctgtagccctgatcgacgaattccaggataccgacccggttcaa
tacggcattttcgaacgtatctaccgcatcagcgaaaatcgtgaggaaaccggcctgttc
atgattggcgaccccaagcaggccatctatgccttccgtggcgccgacatttacacctac
ctgtccgcacggcgcgccaccgctgggaggctgcacagcctggacaccaactaccgttcc
agcgaggcaatggtggccgctgtcaaccaggtgttcctgcaggctgaagcccgtgatcaa
gggcggggcgccttcctgttccgcgaaaacgatgacaacccgttgccgttcatcgaggtc
cgcgccaaggggcgcagcgaacgcctgctgatcgacggccaagccatcgcggcactgcag
tgctggcaattggaaagcgacgaacccgtctccagcacactgtaccggcagcaacttgcg
gccagttgcgccagccacatcgtcgccctgctcaacagtgcccagcgcggcctgagcggc
ttcagcaaggctgacggtgaactgcgcccctgcctgccctctgacatcgccattctcgta
cgtgacggccatgaggcgcagttggtccgaagcgagcttgcctcccgtgacgttcgcagc
gtgtacctctccgacaaggactcggtcttcgccgcccaggaagcgcttgacctgctggcc
tggctcaaggcctgcgccgagccggactccgagcgcctgctcaaggccgccttggccagc
ctgaccctggagctgtcgctggccgagctggaccagttgaaccaggacgagcgggtctgg
gaagactgggtaatgcgttttcgccgctaccgcgacacctggcagcgccagggcgtactg
ccgatgttgcggcacctgctgcatgatttccagttgccgcgtaggctaattgcccgcagc
gatggcgagcgggtgttgaccaacctgctgcacctggccgagctgctgcagcaagcggcg
ggtgaactggatggcgaacaagcgctgatccgccatctggccgagcacctggccaacgcc
ggccaggctggtgaagaccagatccttcgccttgagagtgatgaacagctggtcaaggtc
gtgacgatccacaagtccaagggcctggaataccccttggtctacctgccgttcatctgc
accagcaaaccggtcgacggtagccgcctgccgctggcctggcacgacagccaagggaat
gcgcaactgaccctcacccccgacccggcgcagattaccctggccgatgatgaacgcctc
gctgaagacctgcgcctgctctacgtggccctcacacgtgcccagcacgcatgctggctg
ggcgtcgccgacctcaagcgcggtaaccagaaaagctcgcagttgcaccgttccgcgctc
ggctatctgcttggcggcggtgtgcaattgcagggctcggcacaactgacggactggttg
cagaacttgctggcaggctgcccgcacattgcctgccccggcctgccagaggcagatgaa
gagcgctaccgctcgccccatgccgaacgcgagctgctgcctgcacgcaagcctcgtcga
actgcggcggagcattggtggatcgcgtcctacagcgccttgcgggtgggggaacagaca
ctgggtgccgacagttcccaggcacagcagttgctcgacgatgaggggggcgatgctcaa
ctgccccgtgaggtgcccgccgacagcggcgacattcaccgcttcccgcgcgggccgaac
cccggcaccttcctccatggtttgcttgagtgggccggccgcgaaggcttcgccgaggtc
gctgccaaccccaaactgatcgagcgcaccgtcggccagcgctgcaaccggcgcgactgg
accggctggatcccgacacttagccaatggttgcagcaactgctgaacgagccactgccg
gcccgtgacatgagcctgacgttggcgcagttgcagcactatcagatagaaatggagttc
tggttcgccagccatcaggtcgatgccgagcaactggaccggttggtcgcccgccacacc
catccaggcgcagctcgccccgctgctcagccgacactgctcaacggcatgttcaaaggc
tttatcgacctggcgttcgagctcgatggccgctacttcgtagccgattacaagtccaac
tggcttggcccggatatccaggcctatgacacgctagccatggaaaaggcgatccttgag
caccgctacgatttgcaatatgtgctttatttgctggccctgcatcgccagctgcgtgca
cggctgcccgaatacgattacgaccggcatgtgggcggcgcgctgttcatcttcttgcgt
gcggccagcagcagcggccacggcgtttacttcgtcaagccgccacgtgagttgatcgag
gcactcgatgcgttgttccgtggcgttcacgcgcctcaacaacaggacctgttcgccgga
gctgcgccatga
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