KEGG   Pseudomonas putida W619: PputW619_1091
Entry
PputW619_1091     CDS       T00675                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ppw  Pseudomonas putida W619
Brite
KEGG Orthology (KO) [BR:ppw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppw03400]
    PputW619_1091
Enzymes [BR:ppw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PputW619_1091
    5.6.2.6  RNA 3'-5' helicase
     PputW619_1091
DNA repair and recombination proteins [BR:ppw03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PputW619_1091
SSDB
Motif
Pfam: DEAD_assoc DEAD WH4_Lhr WH_Lhr Helicase_C WH3_Lhr ResIII Cas3-like_C_2 MarR_2 HTH_IclR HTH_5 DprA_WH TrmB GntR MarR HTH_24
Other DBs
NCBI-ProteinID: ACA71596
UniProt: B1J4F8
LinkDB
Position
complement(1203216..1207571)
AA seq 1451 aa
MEPCRRQAGFTDERSLANLPATLHNLLMNLPAHQHPVLELFHPAIGTWFRRHFATVTDAQ
ARAWPLIHARQSMLLAAPTGSGKTLSAFLAVLDELFRQGLEHDGELPAQTQIVYVSPLKA
LSNDIRLNLQAPLEGISQALLDQGLTPPRITTAVRTGDTPQKERAAMRKLAPHILVTTPE
SLYVLMGSASGRAGLSGVHTVIVDEIHALAGNKRGAHLALTLERLQALTGQGLRRIGLSA
TQRPVERVAAFLAGHQRPCAIVDIGHTRQRDLALEVPPVPLGAVMATDVWNLVYDRLAIL
AREHRTTLVFVNTRRLAERLTRHLSDRLGKEAVAAHHGSLAKELRLDAEQRLKNGQLQVL
VATASLELGIDVGDVDLVCQIASPGSIAAFLQRVGRSGHQVEGIPKGRLFATSRDDLIEC
TALLDCVHQGELDQLHIPHAPLDVLAQQIVAETSNQPWQEQALFDCLRQATPYTELDTRH
YQALLSMLAEGYNGRQGIRSAYLHRDAVSGTLRGRRGSQLTALTSGGTIPETADYAVLLE
PQALNIGSVNEDFAVESIAGDIFQLGNASYRIMRVEPGRVRVEDAHGLPPTIPFWLGEAP
GRSDELSAAVARLQARIDEQLGLGNGAFAPVLSWLQNTYALDEACASQLLDYLGRTREVL
GALPSQDTLVMERFFDESGGTQLIIHSPYGSRINRAWGLALRKRFCRTFNFELQAAASED
AIVLSLSTSHSFELDEVWRYLSSRNAEHILIQALLDAPLFGVRWRWNAAVAMALPRYVGG
RKVAPQIQRMKSEDLIAAVFPDQIACLENIAGERQIPDHPLIEQTLDDCLHEAMDSEGWL
ALLRRMESDQVRLLSRDLPAPSPLASAILNARPYAFLDDAPLEERRTQAVLNRRWNEVHS
GDDLGALDADAISAVQAEAWPQPGNADEMHEALMTLGAISQHEAQANPTWGLLLRQLAKA
GRAARLPDEHLWLARERLSLLKALYPDARLEPDLHVLPGFEQTLDPDSALSELLRARLSG
HGPLTLAQIAAPLGKPQPAIEQALARLEAEGYVLRGQFSPGEVQRQWCERHLLARIHRYT
VKRLRREIEPVSLQDFMRFMFDWQHLAADEKLRGPQAVAEVLEQLQGFPAAAGAWEAELL
PARIKDYSTHWLDEACRSGQFAWSRLAGKVSSSTLASTPLVLLPRQHLGLWRSLVPAPAL
DELSPRAQRVHEVLQAHGALFFDELTQQAHLLPSELETALQELVGSGLASADSFTGLRSL
ITPAAKRSSRNSRRGHAPISTSMAHAGRWALLRRGNAEVDDVQRLEHVARTLLRRYGVIC
WRLLERESDVLPPWRELLRCCHRLEARGEIRGGRFIAGLAGEQFALPEAVGLLRQVRRRE
MEGALVVVSASDPLNLIGSLLPGAKVPAAGGNRVLYHDGVPVAVRIANRYTYLVQATNEE
QQRWRQKLLRE
NT seq 4356 nt   +upstreamnt  +downstreamnt
atggagccctgtcgccggcaagccggcttcacagacgaacggtcccttgccaatctgcca
gcgaccctccataaccttctcatgaacctgcctgcccatcagcacccggtgctggagctg
ttccaccccgccatcggcacctggttccgtcgccatttcgccacggtcaccgacgcccag
gcccgcgcctggccgttgattcacgcacgccaatcgatgctgctggccgcgcccaccggc
tcgggcaaaaccttgagcgcctttctcgcggtgctcgacgaactgttccgtcaaggcctt
gagcacgacggcgaactgcccgcgcaaacccagatagtctacgtttcaccgctcaaggct
ctgtccaatgatatccgcctgaacctgcaggcgccgctcgaaggcatcagccaggcgctg
ttagaccaggggctgacgccacctcgtatcactactgccgtgcgcaccggcgatacgccg
caaaaagaacgcgcggccatgcgcaagttggccccgcacatcctcgttaccacgcctgag
tcgctttatgtgctgatggggtctgcctcgggccgtgctggcctgagcggcgtgcacacg
gtgatcgtcgatgagattcacgccttggccggcaacaagcgcggcgcccacttggcactg
acgctggagcgcctccaagcgctcaccgggcaagggctgcggcgcatcggcctgtccgcg
acccagcgcccggtggagcgcgtggccgcgttcctggccggtcaccaacgcccttgcgca
atcgtcgatatcggccacacccgccagcgcgaccttgcccttgaagtgccccccgtgccc
ttgggcgcggtcatggctacggatgtgtggaacctggtctacgatcgccttgcaattctg
gcccgcgaacaccgcaccacgttggtgttcgtcaacactcggcgcctggccgagcgcctc
acccgccacctcagcgaccgccttggcaaagaggccgtggccgcacaccacggcagcctg
gccaaggagctgcgcctggatgcggagcagcgcctgaaaaacggccagttgcaggtgctg
gtagccacggcttcactggagctgggcatcgatgtcggtgatgtcgatctggtttgccag
atcgcctccccaggctccatcgccgccttcttgcagcgggtcggccgctccgggcaccag
gtcgaaggcatccccaaagggcgcctgttcgccacctcgcgggatgatctgatcgagtgc
acggcactgctcgactgtgttcaccagggcgagctcgaccagttgcacataccccatgcg
ccactggacgtactggcccagcagatcgtcgctgaaaccagcaaccagccgtggcaggaa
caggcattgttcgactgcctgcgccaggcaacgccctacaccgaactggacaccaggcat
taccaagccctgctaagcatgctcgccgagggctacaacgggcgccaaggcatccgcagc
gcctacctgcaccgcgacgcggtgagcggtaccttgcgcgggcgccgcggtagccaactg
accgcgctcaccagcggcgggaccatccccgagaccgccgactatgctgtgctgctggag
ccgcaggcgctgaacatcggaagcgtcaacgaagactttgccgtggagagcattgctggc
gacatctttcagttgggcaacgcgtcctatcgcatcatgcgggtggaacccggccgggta
agggtcgaagacgcccacggcctgccgccgaccattccattctggctcggagaagcgccg
ggacgcagtgatgaattgtccgctgccgttgcccgcctgcaggcacgtatcgatgagcaa
ctggggcttggtaacggcgctttcgccccagtgctgtcatggctgcagaatacctatgcg
ctggacgaggcctgcgccagccaactgctcgattacctggggcgtacccgtgaagtgctg
ggcgccctgccctcgcaagacacgctggtgatggagcgcttcttcgacgagtccggcggc
acccagttgatcatccattcaccctacggcagccgcatcaaccgcgcctggggcctggcg
ctgcgcaaacgcttctgccgcacgttcaatttcgaattgcaggcggcagccagcgaggac
gccatcgtgttgtcactgtcgaccagccacagtttcgagctggacgaagtctggcgctac
ctgtccagccgcaacgccgagcacattctcatccaggccctgctcgatgcgcccttgttc
ggggtgcgctggcgttggaacgccgcagtggcaatggccttgcctcgctacgtcggggga
cgcaaggtcgcgccgcagatccagcgcatgaaaagcgaagacctgattgccgccgtgttc
cccgaccagatcgcctgcctggaaaacatcgccggtgaacggcaaatcccggatcacccg
ctgatcgagcagaccctcgacgactgcctgcacgaagccatggacagcgagggctggctg
gcgctgttgaggcgcatggaaagtgaccaggtgcgcttgctgagccgcgacctgccggcc
ccctcgccgctggcctctgccatcctcaacgccaggccttacgcgttccttgacgatgcc
ccgctggaggagcgccgaacccaggcggtactcaaccgacgctggaacgaggtgcacagt
ggcgatgacctgggcgcgctggacgccgatgccatcagcgctgtccaggcagaggcctgg
ccgcaacccggcaacgccgacgagatgcacgaagccttgatgaccctgggcgcgatcagc
cagcacgaagcccaggcgaacccaacctggggcttgctgctcaggcaactggccaaggca
ggccgagcggcgcgcttgcccgacgaacacctgtggctggcccgcgagcgcctgagcctg
ctaaaagcgctgtatccggatgcacgcctggagcccgacctccacgtgctccccggcttc
gaacagaccctggacccggacagcgctctgagcgagctgctgcgcgcccgcctgagcggc
cacggcccgctgaccctggcgcagatcgccgctccactgggcaagccgcagcctgccatc
gaacaggcactggcccgcctggaagcagagggctacgtgctgcgtggccagttcagccca
ggtgaggtccaacgccaatggtgcgaacgccacctgttggcgcgcatccatcgctacaca
gtcaagcgcctgcgccgggagatcgagccggtaagcctgcaggacttcatgcgctttatg
tttgactggcagcacctggcggccgacgaaaaactgcgtgggccgcaagccgtagctgaa
gtgcttgagcagttgcaggggttccctgccgcggccggcgcctgggaggcagaactgctg
ccggcacggatcaaggactacagcactcactggctcgacgaggcgtgccgcagcgggcag
ttcgcctggagccgcctggcgggcaaggtgtcgagcagtacgctggcgagcacgccactg
gtgctgttgccacgtcaacacctgggcctgtggcgcagccttgtgcctgcgccggctctg
gacgagctgagcccgcgtgcgcaacgtgtgcatgaagtactgcaggcgcatggcgcactg
ttcttcgacgaactgacccagcaagcccacttgttgcccagcgagctggaaacggcgtta
caggaattggtcggttccggccttgcaagtgccgacagctttacagggctgcgtagcctg
atcaccccggcggcgaaacgctcatcgcgcaacagccggcgcggccatgcgccgatttcc
accagcatggcgcatgccgggcgctgggcgctgttacgcaggggcaatgccgaagtagac
gacgtgcaacggctggaacacgtcgcccgcaccctgctaagacgctacggtgtgatctgc
tggcggctgctggagcgcgaaagtgatgtgctgccaccttggcgtgagctgctgcgctgc
tgccaccggcttgaggcacgcggcgagattcgcggcgggcgcttcatcgccggcttggct
ggggagcagttcgccctgccggaagcggtcgggctgctgcgccaggtgcgccggcgcgag
atggagggcgcgctggtggtggtcagcgccagtgacccgctgaacctgatcgggtcgctg
ctgcccggagcgaaggtgccggcggccggtggcaatcgtgtgttgtaccacgatggcgtg
ccggtggcagtgcgaattgccaaccggtacacctacctggtgcaagcgacgaatgaagag
cagcaacggtggcggcagaaactgctgcgcgaatga

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